Hb_008387_020

Information

Type -
Description -
Location Contig8387: 21195-23129
Sequence    

Annotation

kegg
ID fve:101303341
description uncharacterized protein LOC101303341
nr
ID XP_012070766.1
description PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00837 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60028: 3751-23956 , PASA_asmbl_60029: 21663-22004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008387_020 0.0 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
2 Hb_007426_110 0.0536105353 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
3 Hb_000749_090 0.0642898 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_003517_040 0.0669908919 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
5 Hb_028960_020 0.0682073264 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
6 Hb_188281_040 0.0696204379 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
7 Hb_000568_050 0.0711596069 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
8 Hb_003117_030 0.0716950465 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
9 Hb_000720_050 0.0735350607 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
10 Hb_000053_040 0.0740799607 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
11 Hb_012760_100 0.0755510294 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
12 Hb_003734_010 0.0756237715 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
13 Hb_001348_080 0.0784991708 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
14 Hb_001789_110 0.0789534522 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_006483_110 0.0799188762 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
16 Hb_001008_120 0.0801625761 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
17 Hb_002027_080 0.0801647112 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
18 Hb_000181_100 0.0822633799 - - PREDICTED: protein starmaker [Jatropha curcas]
19 Hb_009270_020 0.0826333244 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
20 Hb_002600_150 0.0833148135 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008387_020 Hb_008387_020 Hb_007426_110 Hb_007426_110 Hb_008387_020--Hb_007426_110 Hb_000749_090 Hb_000749_090 Hb_008387_020--Hb_000749_090 Hb_003517_040 Hb_003517_040 Hb_008387_020--Hb_003517_040 Hb_028960_020 Hb_028960_020 Hb_008387_020--Hb_028960_020 Hb_188281_040 Hb_188281_040 Hb_008387_020--Hb_188281_040 Hb_000568_050 Hb_000568_050 Hb_008387_020--Hb_000568_050 Hb_006483_110 Hb_006483_110 Hb_007426_110--Hb_006483_110 Hb_007426_110--Hb_028960_020 Hb_002218_090 Hb_002218_090 Hb_007426_110--Hb_002218_090 Hb_002263_020 Hb_002263_020 Hb_007426_110--Hb_002263_020 Hb_001655_030 Hb_001655_030 Hb_007426_110--Hb_001655_030 Hb_000731_010 Hb_000731_010 Hb_000749_090--Hb_000731_010 Hb_009252_040 Hb_009252_040 Hb_000749_090--Hb_009252_040 Hb_000130_320 Hb_000130_320 Hb_000749_090--Hb_000130_320 Hb_000749_090--Hb_000568_050 Hb_007763_070 Hb_007763_070 Hb_000749_090--Hb_007763_070 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_001789_110 Hb_001789_110 Hb_003517_040--Hb_001789_110 Hb_000138_100 Hb_000138_100 Hb_003517_040--Hb_000138_100 Hb_003734_010 Hb_003734_010 Hb_003517_040--Hb_003734_010 Hb_000441_090 Hb_000441_090 Hb_003517_040--Hb_000441_090 Hb_003517_040--Hb_002263_020 Hb_028960_020--Hb_006483_110 Hb_001348_080 Hb_001348_080 Hb_028960_020--Hb_001348_080 Hb_002205_030 Hb_002205_030 Hb_028960_020--Hb_002205_030 Hb_000797_040 Hb_000797_040 Hb_028960_020--Hb_000797_040 Hb_004846_220 Hb_004846_220 Hb_028960_020--Hb_004846_220 Hb_188281_040--Hb_001789_110 Hb_000406_200 Hb_000406_200 Hb_188281_040--Hb_000406_200 Hb_003117_030 Hb_003117_030 Hb_188281_040--Hb_003117_030 Hb_005489_040 Hb_005489_040 Hb_188281_040--Hb_005489_040 Hb_000409_050 Hb_000409_050 Hb_188281_040--Hb_000409_050 Hb_000363_310 Hb_000363_310 Hb_188281_040--Hb_000363_310 Hb_011174_020 Hb_011174_020 Hb_000568_050--Hb_011174_020 Hb_012055_110 Hb_012055_110 Hb_000568_050--Hb_012055_110 Hb_006663_060 Hb_006663_060 Hb_000568_050--Hb_006663_060 Hb_000011_270 Hb_000011_270 Hb_000568_050--Hb_000011_270 Hb_000608_300 Hb_000608_300 Hb_000568_050--Hb_000608_300 Hb_000826_070 Hb_000826_070 Hb_000568_050--Hb_000826_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6486 11.9525 12.7246 12.9428 12.8953 14.1348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8588 9.18688 9.88055 19.388 25.2041

CAGE analysis