Hb_001348_080

Information

Type -
Description -
Location Contig1348: 51962-75164
Sequence    

Annotation

kegg
ID rcu:RCOM_1032140
description androgen induced inhibitor of proliferation (as3) / pds5, putative
nr
ID XP_012078230.1
description PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
swissprot
ID Q5F3V3
description Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2
trembl
ID A0A067KKK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12087 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09798: 51879-52679 , PASA_asmbl_09799: 53117-54728 , PASA_asmbl_09800: 54793-55340 , PASA_asmbl_09801: 55584-55877 , PASA_asmbl_09802: 58725-62428 , PASA_asmbl_09803: 58730-62428 , PASA_asmbl_09804: 63474-66465 , PASA_asmbl_09805: 66489-75124 , PASA_asmbl_09806: 68465-68639 , PASA_asmbl_09807: 69453-69775 , PASA_asmbl_09808: 70474-70630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_080 0.0 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
2 Hb_028960_020 0.0567629698 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
3 Hb_012330_010 0.0612369228 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
4 Hb_012733_070 0.0655822122 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
5 Hb_006483_110 0.0680905168 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
6 Hb_002027_080 0.0691679149 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
7 Hb_001518_080 0.0703410251 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
8 Hb_007426_110 0.0712196632 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
9 Hb_001655_030 0.073454001 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
10 Hb_001105_020 0.0750351017 - - expressed protein, putative [Ricinus communis]
11 Hb_005489_040 0.0757218648 - - PREDICTED: cullin-1 [Jatropha curcas]
12 Hb_011231_020 0.0764444834 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
13 Hb_041290_020 0.0767732959 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
14 Hb_079526_040 0.0768138402 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
15 Hb_000773_040 0.0778526594 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
16 Hb_008387_020 0.0784991708 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
17 Hb_000409_050 0.0789982464 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
18 Hb_002055_020 0.0793580947 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
19 Hb_000477_050 0.0806978316 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
20 Hb_004846_220 0.0813138666 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001348_080 Hb_001348_080 Hb_028960_020 Hb_028960_020 Hb_001348_080--Hb_028960_020 Hb_012330_010 Hb_012330_010 Hb_001348_080--Hb_012330_010 Hb_012733_070 Hb_012733_070 Hb_001348_080--Hb_012733_070 Hb_006483_110 Hb_006483_110 Hb_001348_080--Hb_006483_110 Hb_002027_080 Hb_002027_080 Hb_001348_080--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_001348_080--Hb_001518_080 Hb_007426_110 Hb_007426_110 Hb_028960_020--Hb_007426_110 Hb_028960_020--Hb_006483_110 Hb_002205_030 Hb_002205_030 Hb_028960_020--Hb_002205_030 Hb_000797_040 Hb_000797_040 Hb_028960_020--Hb_000797_040 Hb_004846_220 Hb_004846_220 Hb_028960_020--Hb_004846_220 Hb_012330_010--Hb_012733_070 Hb_003280_020 Hb_003280_020 Hb_012330_010--Hb_003280_020 Hb_008511_020 Hb_008511_020 Hb_012330_010--Hb_008511_020 Hb_002749_060 Hb_002749_060 Hb_012330_010--Hb_002749_060 Hb_012330_010--Hb_002027_080 Hb_002968_080 Hb_002968_080 Hb_012733_070--Hb_002968_080 Hb_012733_070--Hb_028960_020 Hb_012733_070--Hb_003280_020 Hb_065500_020 Hb_065500_020 Hb_012733_070--Hb_065500_020 Hb_006483_110--Hb_007426_110 Hb_015807_050 Hb_015807_050 Hb_006483_110--Hb_015807_050 Hb_041290_020 Hb_041290_020 Hb_006483_110--Hb_041290_020 Hb_002263_020 Hb_002263_020 Hb_006483_110--Hb_002263_020 Hb_109980_010 Hb_109980_010 Hb_006483_110--Hb_109980_010 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_002027_080--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_002027_080--Hb_003581_200 Hb_000441_090 Hb_000441_090 Hb_002027_080--Hb_000441_090 Hb_000773_040 Hb_000773_040 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090 Hb_001518_080--Hb_000635_090 Hb_000214_050 Hb_000214_050 Hb_001518_080--Hb_000214_050 Hb_079526_040 Hb_079526_040 Hb_001518_080--Hb_079526_040 Hb_002811_270 Hb_002811_270 Hb_001518_080--Hb_002811_270 Hb_001518_080--Hb_015807_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45567 3.32044 5.98854 4.69363 4.31176 4.40037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.67348 2.86789 3.83186 6.41696 6.78196

CAGE analysis