Hb_003280_020

Information

Type -
Description -
Location Contig3280: 69838-79707
Sequence    

Annotation

kegg
ID rcu:RCOM_0267750
description hypothetical protein
nr
ID XP_012078509.1
description PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
swissprot
ID Q9LTT8
description Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana GN=VCS PE=1 SV=1
trembl
ID A0A067K941
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13187 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34449: 70541-79738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003280_020 0.0 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
2 Hb_004048_120 0.0309716753 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
3 Hb_002749_060 0.0462958906 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
4 Hb_002025_330 0.0501709795 - - peptide transporter, putative [Ricinus communis]
5 Hb_011819_020 0.0531021785 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
6 Hb_000261_480 0.055760205 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
7 Hb_012330_010 0.058323748 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
8 Hb_000890_070 0.0612921999 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
9 Hb_004208_050 0.0644171858 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
10 Hb_065500_020 0.0650904247 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
11 Hb_000358_050 0.0655748269 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
12 Hb_001341_180 0.0668074726 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
13 Hb_001377_350 0.0679203014 - - PREDICTED: exportin-2 [Jatropha curcas]
14 Hb_002874_110 0.069270321 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
15 Hb_060980_010 0.0695631527 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
16 Hb_004143_160 0.0700126482 - - SAB, putative [Ricinus communis]
17 Hb_000001_170 0.0712921776 - - amino acid transporter, putative [Ricinus communis]
18 Hb_002890_130 0.0713827625 - - tip120, putative [Ricinus communis]
19 Hb_005489_040 0.0716266232 - - PREDICTED: cullin-1 [Jatropha curcas]
20 Hb_012733_070 0.0733804384 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003280_020 Hb_003280_020 Hb_004048_120 Hb_004048_120 Hb_003280_020--Hb_004048_120 Hb_002749_060 Hb_002749_060 Hb_003280_020--Hb_002749_060 Hb_002025_330 Hb_002025_330 Hb_003280_020--Hb_002025_330 Hb_011819_020 Hb_011819_020 Hb_003280_020--Hb_011819_020 Hb_000261_480 Hb_000261_480 Hb_003280_020--Hb_000261_480 Hb_012330_010 Hb_012330_010 Hb_003280_020--Hb_012330_010 Hb_004143_160 Hb_004143_160 Hb_004048_120--Hb_004143_160 Hb_004048_120--Hb_002025_330 Hb_004048_120--Hb_002749_060 Hb_004048_120--Hb_000261_480 Hb_000358_050 Hb_000358_050 Hb_004048_120--Hb_000358_050 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_002749_060--Hb_011819_020 Hb_001377_350 Hb_001377_350 Hb_002749_060--Hb_001377_350 Hb_065500_020 Hb_065500_020 Hb_002749_060--Hb_065500_020 Hb_002025_330--Hb_004143_160 Hb_000922_030 Hb_000922_030 Hb_002025_330--Hb_000922_030 Hb_002025_330--Hb_000358_050 Hb_055062_040 Hb_055062_040 Hb_002025_330--Hb_055062_040 Hb_002890_130 Hb_002890_130 Hb_011819_020--Hb_002890_130 Hb_011819_020--Hb_000261_480 Hb_000317_100 Hb_000317_100 Hb_011819_020--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_011819_020--Hb_005215_010 Hb_004208_050 Hb_004208_050 Hb_000261_480--Hb_004208_050 Hb_000261_480--Hb_002890_130 Hb_000261_480--Hb_001377_350 Hb_012733_070 Hb_012733_070 Hb_012330_010--Hb_012733_070 Hb_001348_080 Hb_001348_080 Hb_012330_010--Hb_001348_080 Hb_008511_020 Hb_008511_020 Hb_012330_010--Hb_008511_020 Hb_012330_010--Hb_002749_060 Hb_002027_080 Hb_002027_080 Hb_012330_010--Hb_002027_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.07684 8.84573 8.62786 10.8566 7.70856 8.64048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.91379 4.13172 6.92265 15.3683 14.2419

CAGE analysis