Hb_000358_050

Information

Type -
Description -
Location Contig358: 53754-68941
Sequence    

Annotation

kegg
ID rcu:RCOM_1411120
description hypothetical protein
nr
ID XP_012071358.1
description PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KV78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05045 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36882: 53754-68191 , PASA_asmbl_36884: 67973-69515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_050 0.0 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
2 Hb_004048_120 0.0538952952 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
3 Hb_004143_160 0.0561117567 - - SAB, putative [Ricinus communis]
4 Hb_004208_050 0.0580386886 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
5 Hb_000922_030 0.0596504904 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
6 Hb_011485_060 0.0637358047 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
7 Hb_135572_010 0.065127562 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
8 Hb_003280_020 0.0655748269 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
9 Hb_019337_020 0.0668732517 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
10 Hb_002025_330 0.0678101441 - - peptide transporter, putative [Ricinus communis]
11 Hb_000261_480 0.0680689856 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
12 Hb_002749_060 0.0702473838 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
13 Hb_000809_230 0.073406687 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
14 Hb_001377_350 0.0750619505 - - PREDICTED: exportin-2 [Jatropha curcas]
15 Hb_004677_050 0.0752986851 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
16 Hb_001440_030 0.075719257 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
17 Hb_003544_050 0.0770889837 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
18 Hb_000890_070 0.0772611502 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
19 Hb_002213_020 0.0781273094 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
20 Hb_002768_060 0.0783418164 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000358_050 Hb_000358_050 Hb_004048_120 Hb_004048_120 Hb_000358_050--Hb_004048_120 Hb_004143_160 Hb_004143_160 Hb_000358_050--Hb_004143_160 Hb_004208_050 Hb_004208_050 Hb_000358_050--Hb_004208_050 Hb_000922_030 Hb_000922_030 Hb_000358_050--Hb_000922_030 Hb_011485_060 Hb_011485_060 Hb_000358_050--Hb_011485_060 Hb_135572_010 Hb_135572_010 Hb_000358_050--Hb_135572_010 Hb_003280_020 Hb_003280_020 Hb_004048_120--Hb_003280_020 Hb_004048_120--Hb_004143_160 Hb_002025_330 Hb_002025_330 Hb_004048_120--Hb_002025_330 Hb_002749_060 Hb_002749_060 Hb_004048_120--Hb_002749_060 Hb_000261_480 Hb_000261_480 Hb_004048_120--Hb_000261_480 Hb_007994_010 Hb_007994_010 Hb_004143_160--Hb_007994_010 Hb_004143_160--Hb_002025_330 Hb_004143_160--Hb_135572_010 Hb_002639_080 Hb_002639_080 Hb_004143_160--Hb_002639_080 Hb_004208_050--Hb_000261_480 Hb_004208_050--Hb_004048_120 Hb_011819_020 Hb_011819_020 Hb_004208_050--Hb_011819_020 Hb_002890_130 Hb_002890_130 Hb_004208_050--Hb_002890_130 Hb_002411_110 Hb_002411_110 Hb_004208_050--Hb_002411_110 Hb_000922_030--Hb_002025_330 Hb_000922_030--Hb_135572_010 Hb_000922_030--Hb_004143_160 Hb_000365_240 Hb_000365_240 Hb_000922_030--Hb_000365_240 Hb_007472_090 Hb_007472_090 Hb_000922_030--Hb_007472_090 Hb_000890_070 Hb_000890_070 Hb_011485_060--Hb_000890_070 Hb_002213_020 Hb_002213_020 Hb_011485_060--Hb_002213_020 Hb_011485_060--Hb_004048_120 Hb_011485_060--Hb_004208_050 Hb_000059_240 Hb_000059_240 Hb_011485_060--Hb_000059_240 Hb_135572_010--Hb_007994_010 Hb_001377_100 Hb_001377_100 Hb_135572_010--Hb_001377_100 Hb_000363_300 Hb_000363_300 Hb_135572_010--Hb_000363_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.14444 5.88713 4.13148 6.25655 3.75913 6.16692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.6757 3.44653 5.20754 10.0401 10.4923

CAGE analysis