Hb_002213_020

Information

Type -
Description -
Location Contig2213: 24393-41046
Sequence    

Annotation

kegg
ID rcu:RCOM_0470870
description hypothetical protein
nr
ID XP_012067510.1
description PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
swissprot
ID Q5U241
description Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2
trembl
ID A0A067LBV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26998 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22823: 24793-34250 , PASA_asmbl_22824: 35377-35660 , PASA_asmbl_22825: 39149-39360 , PASA_asmbl_22826: 40327-41119
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002213_020 0.0 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
2 Hb_004677_050 0.044575822 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
3 Hb_000984_170 0.0658411991 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
4 Hb_004208_050 0.0731592279 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
5 Hb_011485_060 0.0751890141 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
6 Hb_000358_050 0.0781273094 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
7 Hb_001925_060 0.0802344924 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
8 Hb_000340_490 0.0810439532 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
9 Hb_004048_120 0.0814224941 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
10 Hb_002805_210 0.0831315192 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
11 Hb_005663_110 0.0850824459 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
12 Hb_004143_160 0.0852162574 - - SAB, putative [Ricinus communis]
13 Hb_006531_020 0.0867637532 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
14 Hb_008948_020 0.0870756654 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
15 Hb_001269_380 0.0879999256 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
16 Hb_004327_040 0.0882135078 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
17 Hb_000920_300 0.0882718037 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
18 Hb_016347_010 0.0890546821 - - protein transporter, putative [Ricinus communis]
19 Hb_003734_010 0.0896278445 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
20 Hb_000890_070 0.089736377 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002213_020 Hb_002213_020 Hb_004677_050 Hb_004677_050 Hb_002213_020--Hb_004677_050 Hb_000984_170 Hb_000984_170 Hb_002213_020--Hb_000984_170 Hb_004208_050 Hb_004208_050 Hb_002213_020--Hb_004208_050 Hb_011485_060 Hb_011485_060 Hb_002213_020--Hb_011485_060 Hb_000358_050 Hb_000358_050 Hb_002213_020--Hb_000358_050 Hb_001925_060 Hb_001925_060 Hb_002213_020--Hb_001925_060 Hb_004677_050--Hb_000984_170 Hb_005663_110 Hb_005663_110 Hb_004677_050--Hb_005663_110 Hb_016347_010 Hb_016347_010 Hb_004677_050--Hb_016347_010 Hb_004677_050--Hb_004208_050 Hb_002749_060 Hb_002749_060 Hb_004677_050--Hb_002749_060 Hb_004030_080 Hb_004030_080 Hb_000984_170--Hb_004030_080 Hb_000984_170--Hb_005663_110 Hb_006452_120 Hb_006452_120 Hb_000984_170--Hb_006452_120 Hb_000011_060 Hb_000011_060 Hb_000984_170--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_000984_170--Hb_002908_050 Hb_000261_480 Hb_000261_480 Hb_004208_050--Hb_000261_480 Hb_004048_120 Hb_004048_120 Hb_004208_050--Hb_004048_120 Hb_004208_050--Hb_000358_050 Hb_011819_020 Hb_011819_020 Hb_004208_050--Hb_011819_020 Hb_002890_130 Hb_002890_130 Hb_004208_050--Hb_002890_130 Hb_002411_110 Hb_002411_110 Hb_004208_050--Hb_002411_110 Hb_011485_060--Hb_000358_050 Hb_000890_070 Hb_000890_070 Hb_011485_060--Hb_000890_070 Hb_011485_060--Hb_004048_120 Hb_011485_060--Hb_004208_050 Hb_000059_240 Hb_000059_240 Hb_011485_060--Hb_000059_240 Hb_000358_050--Hb_004048_120 Hb_004143_160 Hb_004143_160 Hb_000358_050--Hb_004143_160 Hb_000922_030 Hb_000922_030 Hb_000358_050--Hb_000922_030 Hb_135572_010 Hb_135572_010 Hb_000358_050--Hb_135572_010 Hb_001925_060--Hb_002411_110 Hb_003040_050 Hb_003040_050 Hb_001925_060--Hb_003040_050 Hb_007413_010 Hb_007413_010 Hb_001925_060--Hb_007413_010 Hb_011174_020 Hb_011174_020 Hb_001925_060--Hb_011174_020 Hb_000317_100 Hb_000317_100 Hb_001925_060--Hb_000317_100 Hb_000795_040 Hb_000795_040 Hb_001925_060--Hb_000795_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.79756 4.18005 1.95748 3.47861 2.0107 2.79614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75284 2.26331 2.0635 5.38019 4.74157

CAGE analysis