Hb_004677_050

Information

Type -
Description -
Location Contig4677: 68018-87515
Sequence    

Annotation

kegg
ID rcu:RCOM_0617240
description Importin-7, putative
nr
ID XP_012066264.1
description PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
swissprot
ID F4IRR2
description Importin beta-like SAD2 OS=Arabidopsis thaliana GN=SAD2 PE=1 SV=1
trembl
ID A0A067L6M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23830 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable importin-7 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44121: 68077-87703 , PASA_asmbl_44122: 78227-78788 , PASA_asmbl_44124: 85770-85995 , PASA_asmbl_44125: 82631-83008 , PASA_asmbl_44127: 72442-72583 , PASA_asmbl_44128: 83444-83747
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004677_050 0.0 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
2 Hb_002213_020 0.044575822 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
3 Hb_000984_170 0.0454573811 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
4 Hb_005663_110 0.0580170865 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
5 Hb_016347_010 0.0630267917 - - protein transporter, putative [Ricinus communis]
6 Hb_004208_050 0.0645916228 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
7 Hb_002749_060 0.0675549175 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
8 Hb_004450_070 0.0676954795 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
9 Hb_012286_040 0.0706265222 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
10 Hb_000890_070 0.0717673134 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
11 Hb_004048_120 0.0728544342 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
12 Hb_001269_380 0.0732031053 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
13 Hb_019280_010 0.0732308971 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
14 Hb_003544_050 0.0733451307 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
15 Hb_006452_120 0.0743207922 - - PREDICTED: protein FAM188A [Jatropha curcas]
16 Hb_004030_080 0.0745325486 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
17 Hb_000358_050 0.0752986851 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
18 Hb_008948_020 0.0761024111 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
19 Hb_002908_050 0.0763602589 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
20 Hb_000363_040 0.0766603392 - - Protein transport protein Sec24A, putative [Ricinus communis]

Gene co-expression network

sample Hb_004677_050 Hb_004677_050 Hb_002213_020 Hb_002213_020 Hb_004677_050--Hb_002213_020 Hb_000984_170 Hb_000984_170 Hb_004677_050--Hb_000984_170 Hb_005663_110 Hb_005663_110 Hb_004677_050--Hb_005663_110 Hb_016347_010 Hb_016347_010 Hb_004677_050--Hb_016347_010 Hb_004208_050 Hb_004208_050 Hb_004677_050--Hb_004208_050 Hb_002749_060 Hb_002749_060 Hb_004677_050--Hb_002749_060 Hb_002213_020--Hb_000984_170 Hb_002213_020--Hb_004208_050 Hb_011485_060 Hb_011485_060 Hb_002213_020--Hb_011485_060 Hb_000358_050 Hb_000358_050 Hb_002213_020--Hb_000358_050 Hb_001925_060 Hb_001925_060 Hb_002213_020--Hb_001925_060 Hb_004030_080 Hb_004030_080 Hb_000984_170--Hb_004030_080 Hb_000984_170--Hb_005663_110 Hb_006452_120 Hb_006452_120 Hb_000984_170--Hb_006452_120 Hb_000011_060 Hb_000011_060 Hb_000984_170--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_000984_170--Hb_002908_050 Hb_003544_030 Hb_003544_030 Hb_005663_110--Hb_003544_030 Hb_001434_080 Hb_001434_080 Hb_005663_110--Hb_001434_080 Hb_000327_250 Hb_000327_250 Hb_005663_110--Hb_000327_250 Hb_039946_050 Hb_039946_050 Hb_005663_110--Hb_039946_050 Hb_000363_040 Hb_000363_040 Hb_016347_010--Hb_000363_040 Hb_016347_010--Hb_000327_250 Hb_016347_010--Hb_002908_050 Hb_016347_010--Hb_003544_030 Hb_021576_010 Hb_021576_010 Hb_016347_010--Hb_021576_010 Hb_000261_480 Hb_000261_480 Hb_004208_050--Hb_000261_480 Hb_004048_120 Hb_004048_120 Hb_004208_050--Hb_004048_120 Hb_004208_050--Hb_000358_050 Hb_011819_020 Hb_011819_020 Hb_004208_050--Hb_011819_020 Hb_002890_130 Hb_002890_130 Hb_004208_050--Hb_002890_130 Hb_002411_110 Hb_002411_110 Hb_004208_050--Hb_002411_110 Hb_003280_020 Hb_003280_020 Hb_002749_060--Hb_003280_020 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_002749_060--Hb_011819_020 Hb_002749_060--Hb_004048_120 Hb_001377_350 Hb_001377_350 Hb_002749_060--Hb_001377_350 Hb_065500_020 Hb_065500_020 Hb_002749_060--Hb_065500_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.0501 9.23266 4.98265 10.1542 4.66208 6.42904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.54285 5.27602 5.69856 12.5237 10.2235

CAGE analysis