Hb_000261_480

Information

Type -
Description -
Location Contig261: 457224-465496
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08150g
description POPTRDRAFT_577415; 26S proteasome regulatory subunit family protein
nr
ID XP_002323770.1
description 26S proteasome regulatory subunit family protein [Populus trichocarpa]
swissprot
ID O48844
description 26S proteasome non-ATPase regulatory subunit 1 homolog A OS=Arabidopsis thaliana GN=RPN2A PE=1 SV=1
trembl
ID B9IJG7
description 26S proteasome regulatory subunit family protein OS=Populus trichocarpa GN=POPTR_0017s08150g PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 1 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27320: 457353-465461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_480 0.0 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
2 Hb_004208_050 0.0390134628 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
3 Hb_011819_020 0.0447091431 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
4 Hb_004048_120 0.053196115 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
5 Hb_002890_130 0.0537087732 - - tip120, putative [Ricinus communis]
6 Hb_003280_020 0.055760205 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
7 Hb_001377_350 0.0572877181 - - PREDICTED: exportin-2 [Jatropha curcas]
8 Hb_041327_010 0.0582591124 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
9 Hb_001105_020 0.0620287883 - - expressed protein, putative [Ricinus communis]
10 Hb_001440_030 0.0642534499 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
11 Hb_012286_040 0.0647723093 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
12 Hb_002639_080 0.0660441977 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
13 Hb_002749_060 0.0671409326 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
14 Hb_000537_050 0.0673702616 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
15 Hb_002411_110 0.0678636485 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
16 Hb_000358_050 0.0680689856 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
17 Hb_000003_100 0.0690224997 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
18 Hb_009296_040 0.0690951847 - - hypothetical protein L484_007435 [Morus notabilis]
19 Hb_001341_180 0.0697498057 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
20 Hb_000069_120 0.0721731951 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000261_480 Hb_000261_480 Hb_004208_050 Hb_004208_050 Hb_000261_480--Hb_004208_050 Hb_011819_020 Hb_011819_020 Hb_000261_480--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_000261_480--Hb_004048_120 Hb_002890_130 Hb_002890_130 Hb_000261_480--Hb_002890_130 Hb_003280_020 Hb_003280_020 Hb_000261_480--Hb_003280_020 Hb_001377_350 Hb_001377_350 Hb_000261_480--Hb_001377_350 Hb_004208_050--Hb_004048_120 Hb_000358_050 Hb_000358_050 Hb_004208_050--Hb_000358_050 Hb_004208_050--Hb_011819_020 Hb_004208_050--Hb_002890_130 Hb_002411_110 Hb_002411_110 Hb_004208_050--Hb_002411_110 Hb_011819_020--Hb_002890_130 Hb_000317_100 Hb_000317_100 Hb_011819_020--Hb_000317_100 Hb_002749_060 Hb_002749_060 Hb_011819_020--Hb_002749_060 Hb_011819_020--Hb_003280_020 Hb_005215_010 Hb_005215_010 Hb_011819_020--Hb_005215_010 Hb_004048_120--Hb_003280_020 Hb_004143_160 Hb_004143_160 Hb_004048_120--Hb_004143_160 Hb_002025_330 Hb_002025_330 Hb_004048_120--Hb_002025_330 Hb_004048_120--Hb_002749_060 Hb_004048_120--Hb_000358_050 Hb_002890_130--Hb_002411_110 Hb_002890_130--Hb_000317_100 Hb_002890_130--Hb_005215_010 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_003280_020--Hb_002749_060 Hb_003280_020--Hb_002025_330 Hb_012330_010 Hb_012330_010 Hb_003280_020--Hb_012330_010 Hb_000809_230 Hb_000809_230 Hb_001377_350--Hb_000809_230 Hb_001377_350--Hb_002749_060 Hb_001377_350--Hb_002890_130 Hb_003544_050 Hb_003544_050 Hb_001377_350--Hb_003544_050 Hb_001377_350--Hb_000003_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8263 29.5791 20.9012 29.0415 23.2211 25.2162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7278 15.6658 25.6547 45.1671 36.181

CAGE analysis