Hb_012330_010

Information

Type -
Description -
Location Contig12330: 10635-12572
Sequence    

Annotation

kegg
ID rcu:RCOM_0444630
description RNA-binding protein, putative
nr
ID XP_012088645.1
description PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SG10
description Polyadenylate-binding protein-interacting protein 10 OS=Arabidopsis thaliana GN=CID10 PE=2 SV=1
trembl
ID A0A067JW96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00145 PE=4 SV=1
Gene Ontology
ID GO:0000166
description ctc-interacting domain 11 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07095: 10331-12515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012330_010 0.0 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
2 Hb_012733_070 0.056071678 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
3 Hb_003280_020 0.058323748 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
4 Hb_001348_080 0.0612369228 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
5 Hb_008511_020 0.0706135414 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
6 Hb_002749_060 0.071925654 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
7 Hb_002027_080 0.072248962 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
8 Hb_065500_020 0.0728227871 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
9 Hb_011377_040 0.0747000746 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
10 Hb_002874_110 0.0751715421 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
11 Hb_002025_330 0.0751903541 - - peptide transporter, putative [Ricinus communis]
12 Hb_073171_070 0.0777066238 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
13 Hb_000359_210 0.0783724465 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010294_010 0.0794254055 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
15 Hb_005489_040 0.0808161947 - - PREDICTED: cullin-1 [Jatropha curcas]
16 Hb_002675_030 0.0809172049 - - coatomer beta subunit, putative [Ricinus communis]
17 Hb_004048_120 0.0833439966 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
18 Hb_011819_020 0.0836770166 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
19 Hb_060980_010 0.0841732496 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
20 Hb_000773_040 0.0850356398 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012330_010 Hb_012330_010 Hb_012733_070 Hb_012733_070 Hb_012330_010--Hb_012733_070 Hb_003280_020 Hb_003280_020 Hb_012330_010--Hb_003280_020 Hb_001348_080 Hb_001348_080 Hb_012330_010--Hb_001348_080 Hb_008511_020 Hb_008511_020 Hb_012330_010--Hb_008511_020 Hb_002749_060 Hb_002749_060 Hb_012330_010--Hb_002749_060 Hb_002027_080 Hb_002027_080 Hb_012330_010--Hb_002027_080 Hb_002968_080 Hb_002968_080 Hb_012733_070--Hb_002968_080 Hb_012733_070--Hb_001348_080 Hb_028960_020 Hb_028960_020 Hb_012733_070--Hb_028960_020 Hb_012733_070--Hb_003280_020 Hb_065500_020 Hb_065500_020 Hb_012733_070--Hb_065500_020 Hb_004048_120 Hb_004048_120 Hb_003280_020--Hb_004048_120 Hb_003280_020--Hb_002749_060 Hb_002025_330 Hb_002025_330 Hb_003280_020--Hb_002025_330 Hb_011819_020 Hb_011819_020 Hb_003280_020--Hb_011819_020 Hb_000261_480 Hb_000261_480 Hb_003280_020--Hb_000261_480 Hb_001348_080--Hb_028960_020 Hb_006483_110 Hb_006483_110 Hb_001348_080--Hb_006483_110 Hb_001348_080--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_001348_080--Hb_001518_080 Hb_002675_030 Hb_002675_030 Hb_008511_020--Hb_002675_030 Hb_001440_020 Hb_001440_020 Hb_008511_020--Hb_001440_020 Hb_008511_020--Hb_002027_080 Hb_008511_020--Hb_001518_080 Hb_000049_020 Hb_000049_020 Hb_008511_020--Hb_000049_020 Hb_000345_160 Hb_000345_160 Hb_008511_020--Hb_000345_160 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_002749_060--Hb_011819_020 Hb_002749_060--Hb_004048_120 Hb_001377_350 Hb_001377_350 Hb_002749_060--Hb_001377_350 Hb_002749_060--Hb_065500_020 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_002027_080--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_002027_080--Hb_003581_200 Hb_000441_090 Hb_000441_090 Hb_002027_080--Hb_000441_090 Hb_000773_040 Hb_000773_040 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.195 30.1402 47.1676 52.1558 36.3161 38.164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0374 16.3931 32.1233 56.2192 66.8513

CAGE analysis