Hb_002675_030

Information

Type -
Description -
Location Contig2675: 8827-24898
Sequence    

Annotation

kegg
ID rcu:RCOM_0980380
description coatomer beta subunit, putative (EC:2.7.11.7)
nr
ID XP_002528189.1
description coatomer beta subunit, putative [Ricinus communis]
swissprot
ID Q9C827
description Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1
trembl
ID B9SQC0
description Coatomer beta subunit, putative OS=Ricinus communis GN=RCOM_0980380 PE=4 SV=1
Gene Ontology
ID GO:0030117
description coatomer subunit beta -2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27844: 8859-24923 , PASA_asmbl_27845: 17149-17583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_030 0.0 - - coatomer beta subunit, putative [Ricinus communis]
2 Hb_008511_020 0.0576300586 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
3 Hb_001440_020 0.0720657052 - - exocyst componenet sec8, putative [Ricinus communis]
4 Hb_000579_240 0.0765964466 - - phosphatidylinositol transporter, putative [Ricinus communis]
5 Hb_000960_040 0.0776194505 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
6 Hb_001821_150 0.0778870144 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
7 Hb_000264_350 0.0801487287 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
8 Hb_002784_030 0.0806974388 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
9 Hb_012330_010 0.0809172049 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
10 Hb_000184_070 0.0821372146 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
11 Hb_003417_010 0.0830757911 - - PREDICTED: protein TPLATE [Jatropha curcas]
12 Hb_007982_030 0.0835100372 - - PREDICTED: probable inactive receptor kinase At5g10020 isoform X1 [Jatropha curcas]
13 Hb_006501_090 0.0839331856 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
14 Hb_010294_010 0.0888315807 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
15 Hb_001655_030 0.090034596 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
16 Hb_001518_080 0.0906101882 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
17 Hb_001377_350 0.0941195771 - - PREDICTED: exportin-2 [Jatropha curcas]
18 Hb_159809_030 0.0941261516 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
19 Hb_000123_180 0.0942181405 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
20 Hb_002027_080 0.094413519 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]

Gene co-expression network

sample Hb_002675_030 Hb_002675_030 Hb_008511_020 Hb_008511_020 Hb_002675_030--Hb_008511_020 Hb_001440_020 Hb_001440_020 Hb_002675_030--Hb_001440_020 Hb_000579_240 Hb_000579_240 Hb_002675_030--Hb_000579_240 Hb_000960_040 Hb_000960_040 Hb_002675_030--Hb_000960_040 Hb_001821_150 Hb_001821_150 Hb_002675_030--Hb_001821_150 Hb_000264_350 Hb_000264_350 Hb_002675_030--Hb_000264_350 Hb_008511_020--Hb_001440_020 Hb_002027_080 Hb_002027_080 Hb_008511_020--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_008511_020--Hb_001518_080 Hb_000049_020 Hb_000049_020 Hb_008511_020--Hb_000049_020 Hb_000345_160 Hb_000345_160 Hb_008511_020--Hb_000345_160 Hb_012518_070 Hb_012518_070 Hb_001440_020--Hb_012518_070 Hb_012114_100 Hb_012114_100 Hb_001440_020--Hb_012114_100 Hb_003097_140 Hb_003097_140 Hb_001440_020--Hb_003097_140 Hb_001329_250 Hb_001329_250 Hb_001440_020--Hb_001329_250 Hb_000579_240--Hb_000264_350 Hb_010294_010 Hb_010294_010 Hb_000579_240--Hb_010294_010 Hb_005227_010 Hb_005227_010 Hb_000579_240--Hb_005227_010 Hb_007982_030 Hb_007982_030 Hb_000579_240--Hb_007982_030 Hb_000579_240--Hb_008511_020 Hb_000004_030 Hb_000004_030 Hb_000960_040--Hb_000004_030 Hb_000960_040--Hb_000264_350 Hb_000960_040--Hb_008511_020 Hb_000667_030 Hb_000667_030 Hb_000960_040--Hb_000667_030 Hb_000960_040--Hb_010294_010 Hb_000161_210 Hb_000161_210 Hb_001821_150--Hb_000161_210 Hb_000130_180 Hb_000130_180 Hb_001821_150--Hb_000130_180 Hb_002284_250 Hb_002284_250 Hb_001821_150--Hb_002284_250 Hb_003038_040 Hb_003038_040 Hb_001821_150--Hb_003038_040 Hb_001821_150--Hb_007982_030 Hb_003417_010 Hb_003417_010 Hb_001821_150--Hb_003417_010 Hb_000264_350--Hb_000004_030 Hb_000183_050 Hb_000183_050 Hb_000264_350--Hb_000183_050 Hb_000264_350--Hb_001821_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9256 21.0289 28.3563 40.1265 25.9357 29.7491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.15617 10.0108 23.8716 29.1578 34.7569

CAGE analysis