Hb_000183_050

Information

Type -
Description -
Location Contig183: 85296-92836
Sequence    

Annotation

kegg
ID rcu:RCOM_0852760
description mannosidase alpha class 2a, putative (EC:3.2.1.114)
nr
ID XP_012082412.1
description PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
swissprot
ID Q9LFR0
description Alpha-mannosidase 2 OS=Arabidopsis thaliana GN=GMII PE=1 SV=1
trembl
ID A0A067LDV3
description Alpha-mannosidase OS=Jatropha curcas GN=JCGZ_09672 PE=3 SV=1
Gene Ontology
ID GO:0005768
description alpha-mannosidase 2x

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17855: 87138-87269 , PASA_asmbl_17856: 87918-92626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000183_050 0.0 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
2 Hb_015978_100 0.0681881927 - - PREDICTED: DNA mismatch repair protein MSH6 [Jatropha curcas]
3 Hb_000086_690 0.0713080373 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
4 Hb_011202_020 0.073260015 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
5 Hb_003417_010 0.0735097836 - - PREDICTED: protein TPLATE [Jatropha curcas]
6 Hb_001235_230 0.0770386785 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
7 Hb_000035_410 0.0809561096 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
8 Hb_000264_350 0.0813896663 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
9 Hb_007994_010 0.0816362351 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
10 Hb_000261_100 0.0831726221 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
11 Hb_003805_040 0.0833507753 - - Sacsin [Glycine soja]
12 Hb_162275_040 0.0848637906 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000086_440 0.0848784949 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
14 Hb_000176_130 0.0862532422 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
15 Hb_001401_060 0.0876519442 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
16 Hb_000284_230 0.0884890217 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
17 Hb_001109_060 0.0886203787 - - amino acid transporter, putative [Ricinus communis]
18 Hb_000780_190 0.0893029962 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
19 Hb_006355_020 0.0897799748 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
20 Hb_000556_220 0.0908171161 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000183_050 Hb_000183_050 Hb_015978_100 Hb_015978_100 Hb_000183_050--Hb_015978_100 Hb_000086_690 Hb_000086_690 Hb_000183_050--Hb_000086_690 Hb_011202_020 Hb_011202_020 Hb_000183_050--Hb_011202_020 Hb_003417_010 Hb_003417_010 Hb_000183_050--Hb_003417_010 Hb_001235_230 Hb_001235_230 Hb_000183_050--Hb_001235_230 Hb_000035_410 Hb_000035_410 Hb_000183_050--Hb_000035_410 Hb_000679_270 Hb_000679_270 Hb_015978_100--Hb_000679_270 Hb_001935_160 Hb_001935_160 Hb_015978_100--Hb_001935_160 Hb_002391_050 Hb_002391_050 Hb_015978_100--Hb_002391_050 Hb_005563_060 Hb_005563_060 Hb_015978_100--Hb_005563_060 Hb_000252_050 Hb_000252_050 Hb_015978_100--Hb_000252_050 Hb_009486_170 Hb_009486_170 Hb_000086_690--Hb_009486_170 Hb_001133_030 Hb_001133_030 Hb_000086_690--Hb_001133_030 Hb_003119_080 Hb_003119_080 Hb_000086_690--Hb_003119_080 Hb_001401_060 Hb_001401_060 Hb_000086_690--Hb_001401_060 Hb_000086_690--Hb_011202_020 Hb_011202_020--Hb_001235_230 Hb_005402_040 Hb_005402_040 Hb_011202_020--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_011202_020--Hb_003124_160 Hb_005357_260 Hb_005357_260 Hb_011202_020--Hb_005357_260 Hb_000261_030 Hb_000261_030 Hb_011202_020--Hb_000261_030 Hb_011202_020--Hb_009486_170 Hb_001821_150 Hb_001821_150 Hb_003417_010--Hb_001821_150 Hb_000284_230 Hb_000284_230 Hb_003417_010--Hb_000284_230 Hb_000066_150 Hb_000066_150 Hb_003417_010--Hb_000066_150 Hb_000494_050 Hb_000494_050 Hb_003417_010--Hb_000494_050 Hb_001195_470 Hb_001195_470 Hb_003417_010--Hb_001195_470 Hb_001235_230--Hb_000261_030 Hb_000176_130 Hb_000176_130 Hb_001235_230--Hb_000176_130 Hb_002044_170 Hb_002044_170 Hb_001235_230--Hb_002044_170 Hb_001235_230--Hb_005357_260 Hb_001235_230--Hb_000035_410 Hb_000035_410--Hb_000261_030 Hb_032920_130 Hb_032920_130 Hb_000035_410--Hb_032920_130 Hb_027380_140 Hb_027380_140 Hb_000035_410--Hb_027380_140 Hb_000785_040 Hb_000785_040 Hb_000035_410--Hb_000785_040 Hb_000035_410--Hb_002044_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.17696 11.5338 6.13571 11.8266 11.0065 12.4887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.76478 2.63168 6.76667 9.65661 14.8456

CAGE analysis