Hb_001401_060

Information

Type -
Description -
Location Contig1401: 41358-45845
Sequence    

Annotation

kegg
ID rcu:RCOM_1590690
description Paramyosin, putative
nr
ID XP_012071665.1
description PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
swissprot
ID O48724
description Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1
trembl
ID A0A067KQ57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04266 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10923: 45001-45734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001401_060 0.0 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
2 Hb_000176_130 0.071229901 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
3 Hb_000086_690 0.0727442652 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
4 Hb_001235_230 0.0729797723 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
5 Hb_002044_170 0.0730909042 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
6 Hb_001440_040 0.0824873948 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
7 Hb_000406_020 0.0830329683 - - -
8 Hb_000183_050 0.0876519442 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
9 Hb_003119_080 0.087887211 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
10 Hb_000046_180 0.0880256994 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
11 Hb_032920_130 0.0896799692 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
12 Hb_011202_020 0.0905967146 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
13 Hb_030627_060 0.0931302015 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
14 Hb_000261_030 0.0934107621 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
15 Hb_010417_060 0.0937682774 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
16 Hb_003124_160 0.0949944796 - - dynamin, putative [Ricinus communis]
17 Hb_004064_050 0.095972766 - - Structural maintenance of chromosome, putative [Ricinus communis]
18 Hb_000035_410 0.0964611072 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
19 Hb_005214_150 0.0972882718 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
20 Hb_011609_150 0.1014604681 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]

Gene co-expression network

sample Hb_001401_060 Hb_001401_060 Hb_000176_130 Hb_000176_130 Hb_001401_060--Hb_000176_130 Hb_000086_690 Hb_000086_690 Hb_001401_060--Hb_000086_690 Hb_001235_230 Hb_001235_230 Hb_001401_060--Hb_001235_230 Hb_002044_170 Hb_002044_170 Hb_001401_060--Hb_002044_170 Hb_001440_040 Hb_001440_040 Hb_001401_060--Hb_001440_040 Hb_000406_020 Hb_000406_020 Hb_001401_060--Hb_000406_020 Hb_003124_160 Hb_003124_160 Hb_000176_130--Hb_003124_160 Hb_000176_130--Hb_001235_230 Hb_011202_020 Hb_011202_020 Hb_000176_130--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_000176_130--Hb_000261_030 Hb_000176_130--Hb_002044_170 Hb_009486_170 Hb_009486_170 Hb_000086_690--Hb_009486_170 Hb_001133_030 Hb_001133_030 Hb_000086_690--Hb_001133_030 Hb_000183_050 Hb_000183_050 Hb_000086_690--Hb_000183_050 Hb_003119_080 Hb_003119_080 Hb_000086_690--Hb_003119_080 Hb_000086_690--Hb_011202_020 Hb_001235_230--Hb_011202_020 Hb_001235_230--Hb_000261_030 Hb_001235_230--Hb_002044_170 Hb_005357_260 Hb_005357_260 Hb_001235_230--Hb_005357_260 Hb_000035_410 Hb_000035_410 Hb_001235_230--Hb_000035_410 Hb_030627_060 Hb_030627_060 Hb_002044_170--Hb_030627_060 Hb_032920_130 Hb_032920_130 Hb_002044_170--Hb_032920_130 Hb_002044_170--Hb_000261_030 Hb_002044_170--Hb_000035_410 Hb_001440_040--Hb_001235_230 Hb_001440_040--Hb_032920_130 Hb_005488_150 Hb_005488_150 Hb_001440_040--Hb_005488_150 Hb_001440_040--Hb_002044_170 Hb_000069_320 Hb_000069_320 Hb_001440_040--Hb_000069_320 Hb_000406_020--Hb_001235_230 Hb_000406_020--Hb_003119_080 Hb_000406_020--Hb_000086_690 Hb_000960_100 Hb_000960_100 Hb_000406_020--Hb_000960_100 Hb_002784_110 Hb_002784_110 Hb_000406_020--Hb_002784_110 Hb_000446_120 Hb_000446_120 Hb_000406_020--Hb_000446_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7984 23.272 10.8417 14.0333 25.987 21.1616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.34696 2.72068 9.36053 18.8695 23.445

CAGE analysis