Hb_002044_170

Information

Type -
Description -
Location Contig2044: 179360-187036
Sequence    

Annotation

kegg
ID rcu:RCOM_1211560
description auxilin, putative
nr
ID XP_006375591.1
description hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
swissprot
ID Q9SU08
description Auxilin-related protein 1 OS=Arabidopsis thaliana GN=At4g12780 PE=1 SV=2
trembl
ID U5FQC7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17160g PE=4 SV=1
Gene Ontology
ID GO:0005829
description auxilin-related protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21019: 179309-183585 , PASA_asmbl_21021: 186276-186739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002044_170 0.0 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
2 Hb_001235_230 0.0595302408 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
3 Hb_030627_060 0.0621664691 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
4 Hb_032920_130 0.0653182797 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
5 Hb_000261_030 0.0690718955 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
6 Hb_000176_130 0.0698121978 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
7 Hb_000035_410 0.0716705156 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
8 Hb_001401_060 0.0730909042 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
9 Hb_010417_060 0.0734127997 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
10 Hb_089140_050 0.0796500268 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
11 Hb_005731_090 0.0821376217 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
12 Hb_011202_020 0.0849790655 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
13 Hb_003124_160 0.0854728112 - - dynamin, putative [Ricinus communis]
14 Hb_004453_110 0.0859327534 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
15 Hb_132840_100 0.0890202553 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
16 Hb_000343_110 0.0898968213 - - Heat shock 70 kDa protein, putative [Ricinus communis]
17 Hb_001301_090 0.0902397823 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000046_180 0.0902735173 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
19 Hb_000261_100 0.0918060035 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
20 Hb_001440_040 0.0928424037 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]

Gene co-expression network

sample Hb_002044_170 Hb_002044_170 Hb_001235_230 Hb_001235_230 Hb_002044_170--Hb_001235_230 Hb_030627_060 Hb_030627_060 Hb_002044_170--Hb_030627_060 Hb_032920_130 Hb_032920_130 Hb_002044_170--Hb_032920_130 Hb_000261_030 Hb_000261_030 Hb_002044_170--Hb_000261_030 Hb_000176_130 Hb_000176_130 Hb_002044_170--Hb_000176_130 Hb_000035_410 Hb_000035_410 Hb_002044_170--Hb_000035_410 Hb_011202_020 Hb_011202_020 Hb_001235_230--Hb_011202_020 Hb_001235_230--Hb_000261_030 Hb_001235_230--Hb_000176_130 Hb_005357_260 Hb_005357_260 Hb_001235_230--Hb_005357_260 Hb_001235_230--Hb_000035_410 Hb_000446_120 Hb_000446_120 Hb_030627_060--Hb_000446_120 Hb_005731_090 Hb_005731_090 Hb_030627_060--Hb_005731_090 Hb_002329_040 Hb_002329_040 Hb_030627_060--Hb_002329_040 Hb_148909_030 Hb_148909_030 Hb_030627_060--Hb_148909_030 Hb_030627_060--Hb_001235_230 Hb_010417_060 Hb_010417_060 Hb_032920_130--Hb_010417_060 Hb_032920_130--Hb_000261_030 Hb_032920_130--Hb_000035_410 Hb_006787_060 Hb_006787_060 Hb_032920_130--Hb_006787_060 Hb_032920_130--Hb_001235_230 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000261_030--Hb_000035_410 Hb_003124_160 Hb_003124_160 Hb_000261_030--Hb_003124_160 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_000261_030--Hb_002329_040 Hb_000176_130--Hb_003124_160 Hb_000176_130--Hb_011202_020 Hb_000176_130--Hb_000261_030 Hb_001401_060 Hb_001401_060 Hb_000176_130--Hb_001401_060 Hb_027380_140 Hb_027380_140 Hb_000035_410--Hb_027380_140 Hb_000785_040 Hb_000785_040 Hb_000035_410--Hb_000785_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0397 23.2713 11.1863 17.984 30.3438 23.6579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.11051 5.45785 9.32665 16.9498 18.8638

CAGE analysis