Hb_010417_060

Information

Type -
Description -
Location Contig10417: 36855-40712
Sequence    

Annotation

kegg
ID cam:101489485
description protein SGT1 homolog
nr
ID XP_012086816.1
description PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
swissprot
ID Q9SUT5
description Protein SGT1 homolog B OS=Arabidopsis thaliana GN=SGT1B PE=1 SV=1
trembl
ID A0A067JN12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20532 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01537: 36877-40716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010417_060 0.0 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
2 Hb_000062_470 0.0528556102 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
3 Hb_032920_130 0.0619038231 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
4 Hb_000917_160 0.0672442453 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
5 Hb_002044_170 0.0734127997 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
6 Hb_000191_130 0.0780427205 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
7 Hb_000176_130 0.0853544538 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
8 Hb_000086_150 0.0869961398 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
9 Hb_000661_200 0.0890158288 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
10 Hb_001301_090 0.0905736363 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000261_030 0.0912698533 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
12 Hb_003124_160 0.0914733875 - - dynamin, putative [Ricinus communis]
13 Hb_007813_030 0.0918647741 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
14 Hb_004429_160 0.0919739557 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
15 Hb_005214_150 0.0920397762 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
16 Hb_006787_060 0.0922334013 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
17 Hb_089140_050 0.0933892055 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
18 Hb_001401_060 0.0937682774 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
19 Hb_006618_090 0.0938049162 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
20 Hb_000577_030 0.0939430555 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_010417_060 Hb_010417_060 Hb_000062_470 Hb_000062_470 Hb_010417_060--Hb_000062_470 Hb_032920_130 Hb_032920_130 Hb_010417_060--Hb_032920_130 Hb_000917_160 Hb_000917_160 Hb_010417_060--Hb_000917_160 Hb_002044_170 Hb_002044_170 Hb_010417_060--Hb_002044_170 Hb_000191_130 Hb_000191_130 Hb_010417_060--Hb_000191_130 Hb_000176_130 Hb_000176_130 Hb_010417_060--Hb_000176_130 Hb_000062_470--Hb_000191_130 Hb_000062_470--Hb_000917_160 Hb_000661_200 Hb_000661_200 Hb_000062_470--Hb_000661_200 Hb_004429_160 Hb_004429_160 Hb_000062_470--Hb_004429_160 Hb_007813_030 Hb_007813_030 Hb_000062_470--Hb_007813_030 Hb_000261_030 Hb_000261_030 Hb_032920_130--Hb_000261_030 Hb_032920_130--Hb_002044_170 Hb_000035_410 Hb_000035_410 Hb_032920_130--Hb_000035_410 Hb_006787_060 Hb_006787_060 Hb_032920_130--Hb_006787_060 Hb_001235_230 Hb_001235_230 Hb_032920_130--Hb_001235_230 Hb_000917_160--Hb_000191_130 Hb_118840_050 Hb_118840_050 Hb_000917_160--Hb_118840_050 Hb_000406_230 Hb_000406_230 Hb_000917_160--Hb_000406_230 Hb_007558_070 Hb_007558_070 Hb_000917_160--Hb_007558_070 Hb_002044_170--Hb_001235_230 Hb_030627_060 Hb_030627_060 Hb_002044_170--Hb_030627_060 Hb_002044_170--Hb_000261_030 Hb_002044_170--Hb_000176_130 Hb_002044_170--Hb_000035_410 Hb_000191_130--Hb_004429_160 Hb_000010_360 Hb_000010_360 Hb_000191_130--Hb_000010_360 Hb_000640_310 Hb_000640_310 Hb_000191_130--Hb_000640_310 Hb_000032_010 Hb_000032_010 Hb_000191_130--Hb_000032_010 Hb_003124_160 Hb_003124_160 Hb_000176_130--Hb_003124_160 Hb_000176_130--Hb_001235_230 Hb_011202_020 Hb_011202_020 Hb_000176_130--Hb_011202_020 Hb_000176_130--Hb_000261_030 Hb_001401_060 Hb_001401_060 Hb_000176_130--Hb_001401_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8955 46.8858 26.5534 25.9167 57.8477 33.5839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.359 8.90876 11.8832 29.6067 30.1454

CAGE analysis