Hb_000661_200

Information

Type -
Description -
Location Contig661: 228205-237782
Sequence    

Annotation

kegg
ID rcu:RCOM_1578760
description hypothetical protein
nr
ID XP_012090045.1
description PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
swissprot
ID Q5R8D8
description DnaJ homolog subfamily C member 7 OS=Pongo abelii GN=DNAJC7 PE=2 SV=1
trembl
ID A0A067JH39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25954 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52983: 228112-228213 , PASA_asmbl_52984: 228355-235184 , PASA_asmbl_52986: 235258-237779
cDNA
(Sanger)
(ID:Location)		 038_F14.ab1: 236976-237777

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_200 0.0 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
2 Hb_052764_060 0.0545341197 - - XPA-binding protein, putative [Ricinus communis]
3 Hb_000544_060 0.0559104541 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
4 Hb_007813_030 0.061254195 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
5 Hb_000062_470 0.0632812982 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
6 Hb_001959_020 0.0648035903 - - PREDICTED: uncharacterized protein LOC105638454 isoform X1 [Jatropha curcas]
7 Hb_001021_200 0.0698285762 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
8 Hb_128743_010 0.0706559077 - - RNA-binding protein, putative [Ricinus communis]
9 Hb_000176_100 0.07335852 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
10 Hb_000191_130 0.0756405141 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
11 Hb_000917_160 0.0758844998 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
12 Hb_000260_640 0.0761830755 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
13 Hb_000949_010 0.0780068654 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
14 Hb_144831_010 0.0807339724 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
15 Hb_005104_010 0.0824119244 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
16 Hb_006663_040 0.082766989 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
17 Hb_001141_370 0.0827906953 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
18 Hb_013749_020 0.0841703761 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
19 Hb_000703_130 0.0858818064 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
20 Hb_007818_030 0.0861025923 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]

Gene co-expression network

sample Hb_000661_200 Hb_000661_200 Hb_052764_060 Hb_052764_060 Hb_000661_200--Hb_052764_060 Hb_000544_060 Hb_000544_060 Hb_000661_200--Hb_000544_060 Hb_007813_030 Hb_007813_030 Hb_000661_200--Hb_007813_030 Hb_000062_470 Hb_000062_470 Hb_000661_200--Hb_000062_470 Hb_001959_020 Hb_001959_020 Hb_000661_200--Hb_001959_020 Hb_001021_200 Hb_001021_200 Hb_000661_200--Hb_001021_200 Hb_006663_040 Hb_006663_040 Hb_052764_060--Hb_006663_040 Hb_052764_060--Hb_000544_060 Hb_018133_050 Hb_018133_050 Hb_052764_060--Hb_018133_050 Hb_000832_320 Hb_000832_320 Hb_052764_060--Hb_000832_320 Hb_004480_040 Hb_004480_040 Hb_052764_060--Hb_004480_040 Hb_001141_370 Hb_001141_370 Hb_000544_060--Hb_001141_370 Hb_000544_060--Hb_006663_040 Hb_001902_060 Hb_001902_060 Hb_000544_060--Hb_001902_060 Hb_000544_060--Hb_000832_320 Hb_007813_030--Hb_000062_470 Hb_000197_290 Hb_000197_290 Hb_007813_030--Hb_000197_290 Hb_000574_510 Hb_000574_510 Hb_007813_030--Hb_000574_510 Hb_007813_030--Hb_052764_060 Hb_005104_010 Hb_005104_010 Hb_007813_030--Hb_005104_010 Hb_000191_130 Hb_000191_130 Hb_000062_470--Hb_000191_130 Hb_000917_160 Hb_000917_160 Hb_000062_470--Hb_000917_160 Hb_010417_060 Hb_010417_060 Hb_000062_470--Hb_010417_060 Hb_004429_160 Hb_004429_160 Hb_000062_470--Hb_004429_160 Hb_000176_100 Hb_000176_100 Hb_001959_020--Hb_000176_100 Hb_000949_010 Hb_000949_010 Hb_001959_020--Hb_000949_010 Hb_003581_170 Hb_003581_170 Hb_001959_020--Hb_003581_170 Hb_000069_410 Hb_000069_410 Hb_001959_020--Hb_000069_410 Hb_128743_010 Hb_128743_010 Hb_001959_020--Hb_128743_010 Hb_000577_030 Hb_000577_030 Hb_001021_200--Hb_000577_030 Hb_000230_090 Hb_000230_090 Hb_001021_200--Hb_000230_090 Hb_002022_070 Hb_002022_070 Hb_001021_200--Hb_002022_070 Hb_001021_200--Hb_005104_010 Hb_001021_200--Hb_000917_160 Hb_000236_470 Hb_000236_470 Hb_001021_200--Hb_000236_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.52676 16.9264 6.28418 5.07887 13.5339 8.47054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.3984 3.44737 4.44559 7.31156 7.64669

CAGE analysis