Hb_018133_050

Information

Type -
Description -
Location Contig18133: 38510-45847
Sequence    

Annotation

kegg
ID rcu:RCOM_1509910
description hypothetical protein
nr
ID XP_012080021.1
description PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
swissprot
ID Q9SB63
description Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana GN=MOS1 PE=1 SV=2
trembl
ID A0A067K4B6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11442 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17615: 41068-41688 , PASA_asmbl_17616: 41923-46090 , PASA_asmbl_17617: 41923-46089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018133_050 0.0 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
2 Hb_157966_010 0.0605562143 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
3 Hb_000832_320 0.0610273225 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
4 Hb_006663_040 0.062385572 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
5 Hb_052764_060 0.0673054344 - - XPA-binding protein, putative [Ricinus communis]
6 Hb_000959_040 0.0702945758 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
7 Hb_003284_030 0.0705075477 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
8 Hb_004718_010 0.0753999164 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
9 Hb_004659_080 0.0769092159 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
10 Hb_001967_030 0.0785374146 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
11 Hb_000960_100 0.0790355338 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
12 Hb_002762_130 0.0812023385 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
13 Hb_174865_020 0.0812969926 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
14 Hb_000189_100 0.0828661445 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
15 Hb_007676_100 0.0839411847 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
16 Hb_000544_060 0.0855633634 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
17 Hb_010578_060 0.0858317083 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
18 Hb_000949_010 0.0860901455 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
19 Hb_011947_050 0.0871684588 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
20 Hb_004480_040 0.0872893788 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_018133_050 Hb_018133_050 Hb_157966_010 Hb_157966_010 Hb_018133_050--Hb_157966_010 Hb_000832_320 Hb_000832_320 Hb_018133_050--Hb_000832_320 Hb_006663_040 Hb_006663_040 Hb_018133_050--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_018133_050--Hb_052764_060 Hb_000959_040 Hb_000959_040 Hb_018133_050--Hb_000959_040 Hb_003284_030 Hb_003284_030 Hb_018133_050--Hb_003284_030 Hb_004659_080 Hb_004659_080 Hb_157966_010--Hb_004659_080 Hb_000622_250 Hb_000622_250 Hb_157966_010--Hb_000622_250 Hb_157966_010--Hb_006663_040 Hb_000120_660 Hb_000120_660 Hb_157966_010--Hb_000120_660 Hb_007676_100 Hb_007676_100 Hb_157966_010--Hb_007676_100 Hb_000832_320--Hb_006663_040 Hb_004480_040 Hb_004480_040 Hb_000832_320--Hb_004480_040 Hb_000832_320--Hb_052764_060 Hb_000544_060 Hb_000544_060 Hb_000832_320--Hb_000544_060 Hb_000832_320--Hb_000959_040 Hb_006663_040--Hb_052764_060 Hb_000189_100 Hb_000189_100 Hb_006663_040--Hb_000189_100 Hb_006663_040--Hb_000544_060 Hb_000661_200 Hb_000661_200 Hb_052764_060--Hb_000661_200 Hb_052764_060--Hb_000544_060 Hb_052764_060--Hb_004480_040 Hb_000959_040--Hb_007676_100 Hb_002188_110 Hb_002188_110 Hb_000959_040--Hb_002188_110 Hb_004718_010 Hb_004718_010 Hb_000959_040--Hb_004718_010 Hb_183963_030 Hb_183963_030 Hb_000959_040--Hb_183963_030 Hb_010578_060 Hb_010578_060 Hb_000959_040--Hb_010578_060 Hb_000949_010 Hb_000949_010 Hb_003284_030--Hb_000949_010 Hb_004884_150 Hb_004884_150 Hb_003284_030--Hb_004884_150 Hb_174865_020 Hb_174865_020 Hb_003284_030--Hb_174865_020 Hb_000176_100 Hb_000176_100 Hb_003284_030--Hb_000176_100 Hb_001235_230 Hb_001235_230 Hb_003284_030--Hb_001235_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2704 31.964 6.24676 9.04364 23.2793 22.1299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.34427 6.87458 12.1103 14.9443 13.8074

CAGE analysis