Hb_000544_060

Information

Type -
Description -
Location Contig544: 102756-109462
Sequence    

Annotation

kegg
ID tcc:TCM_012715
description Tyrosine kinase family protein isoform 1
nr
ID XP_012068442.1
description PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID A0A067KY58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03632 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase edr1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47920: 66413-109553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_060 0.0 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
2 Hb_001141_370 0.046695767 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
3 Hb_000661_200 0.0559104541 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
4 Hb_052764_060 0.0644689893 - - XPA-binding protein, putative [Ricinus communis]
5 Hb_006663_040 0.0711874805 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
6 Hb_001902_060 0.0741762558 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
7 Hb_000832_320 0.0751173948 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
8 Hb_004659_080 0.0770428168 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
9 Hb_157966_010 0.077253229 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
10 Hb_000574_510 0.0790504889 - - protein kinase, putative [Ricinus communis]
11 Hb_013749_020 0.0801315627 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
12 Hb_000260_640 0.0803643625 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
13 Hb_001221_160 0.0821082877 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
14 Hb_007813_030 0.0823663474 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
15 Hb_004480_040 0.083569983 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
16 Hb_005104_010 0.085384918 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
17 Hb_000032_010 0.0854019691 - - crooked neck protein, putative [Ricinus communis]
18 Hb_003858_090 0.0855213715 - - Filamin-A-interacting protein, putative [Ricinus communis]
19 Hb_018133_050 0.0855633634 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
20 Hb_007193_110 0.0860286882 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]

Gene co-expression network

sample Hb_000544_060 Hb_000544_060 Hb_001141_370 Hb_001141_370 Hb_000544_060--Hb_001141_370 Hb_000661_200 Hb_000661_200 Hb_000544_060--Hb_000661_200 Hb_052764_060 Hb_052764_060 Hb_000544_060--Hb_052764_060 Hb_006663_040 Hb_006663_040 Hb_000544_060--Hb_006663_040 Hb_001902_060 Hb_001902_060 Hb_000544_060--Hb_001902_060 Hb_000832_320 Hb_000832_320 Hb_000544_060--Hb_000832_320 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001243_060 Hb_001243_060 Hb_001141_370--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_001141_370--Hb_009771_100 Hb_000340_110 Hb_000340_110 Hb_001141_370--Hb_000340_110 Hb_003858_090 Hb_003858_090 Hb_001141_370--Hb_003858_090 Hb_000661_200--Hb_052764_060 Hb_007813_030 Hb_007813_030 Hb_000661_200--Hb_007813_030 Hb_000062_470 Hb_000062_470 Hb_000661_200--Hb_000062_470 Hb_001959_020 Hb_001959_020 Hb_000661_200--Hb_001959_020 Hb_001021_200 Hb_001021_200 Hb_000661_200--Hb_001021_200 Hb_052764_060--Hb_006663_040 Hb_018133_050 Hb_018133_050 Hb_052764_060--Hb_018133_050 Hb_052764_060--Hb_000832_320 Hb_004480_040 Hb_004480_040 Hb_052764_060--Hb_004480_040 Hb_006663_040--Hb_000832_320 Hb_006663_040--Hb_018133_050 Hb_000189_100 Hb_000189_100 Hb_006663_040--Hb_000189_100 Hb_157966_010 Hb_157966_010 Hb_006663_040--Hb_157966_010 Hb_000152_340 Hb_000152_340 Hb_001902_060--Hb_000152_340 Hb_000920_250 Hb_000920_250 Hb_001902_060--Hb_000920_250 Hb_002499_070 Hb_002499_070 Hb_001902_060--Hb_002499_070 Hb_007676_100 Hb_007676_100 Hb_001902_060--Hb_007676_100 Hb_001902_060--Hb_001141_370 Hb_000832_320--Hb_018133_050 Hb_000832_320--Hb_004480_040 Hb_000959_040 Hb_000959_040 Hb_000832_320--Hb_000959_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4735 36.7264 11.0579 9.03308 26.9049 18.9397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.37531 6.9581 9.67576 12.9127 10.3675

CAGE analysis