Hb_000340_110

Information

Type -
Description -
Location Contig340: 111746-121167
Sequence    

Annotation

kegg
ID tcc:TCM_004452
description REF4-related 1, putative isoform 2
nr
ID XP_012092292.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
swissprot
ID F4IN69
description Mediator of RNA polymerase II transcription subunit 33B OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1
trembl
ID A0A067JPN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21970 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mediator of rna polymerase ii transcription subunit 33b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35517: 111812-120958 , PASA_asmbl_35518: 118653-121034 , PASA_asmbl_35519: 115814-116342 , PASA_asmbl_35520: 111812-115364 , PASA_asmbl_35521: 116016-118450 , PASA_asmbl_35522: 117951-120958
cDNA
(Sanger)
(ID:Location)		 019_L17.ab1: 118870-121034

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_110 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
2 Hb_029223_050 0.069707 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
3 Hb_001141_370 0.0785411412 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
4 Hb_001511_110 0.0799898201 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
5 Hb_000544_060 0.0874106739 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
6 Hb_026198_040 0.0888212121 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
7 Hb_144824_010 0.0891206621 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
8 Hb_001053_030 0.0898231931 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
9 Hb_006683_040 0.0904890159 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
10 Hb_000243_380 0.0916149315 - - PREDICTED: histone H1 [Jatropha curcas]
11 Hb_001189_130 0.0940830902 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
12 Hb_012226_010 0.0968362561 - - PREDICTED: protein DGCR14 [Jatropha curcas]
13 Hb_124677_060 0.0972479631 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_000832_320 0.0982805949 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
15 Hb_000932_070 0.0987393891 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
16 Hb_164010_070 0.0987651041 - - Paramyosin, putative [Ricinus communis]
17 Hb_000140_070 0.1036386576 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
18 Hb_000236_220 0.1045882656 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
19 Hb_001902_060 0.1046154071 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
20 Hb_012799_120 0.1087709295 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_110 Hb_000340_110 Hb_029223_050 Hb_029223_050 Hb_000340_110--Hb_029223_050 Hb_001141_370 Hb_001141_370 Hb_000340_110--Hb_001141_370 Hb_001511_110 Hb_001511_110 Hb_000340_110--Hb_001511_110 Hb_000544_060 Hb_000544_060 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_144824_010 Hb_144824_010 Hb_000340_110--Hb_144824_010 Hb_029223_050--Hb_001511_110 Hb_029223_050--Hb_026198_040 Hb_029223_050--Hb_001141_370 Hb_029223_050--Hb_000544_060 Hb_104265_030 Hb_104265_030 Hb_029223_050--Hb_104265_030 Hb_001141_370--Hb_000544_060 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001243_060 Hb_001243_060 Hb_001141_370--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_001141_370--Hb_009771_100 Hb_003858_090 Hb_003858_090 Hb_001141_370--Hb_003858_090 Hb_001511_110--Hb_001141_370 Hb_000832_320 Hb_000832_320 Hb_001511_110--Hb_000832_320 Hb_000243_380 Hb_000243_380 Hb_001511_110--Hb_000243_380 Hb_004371_010 Hb_004371_010 Hb_001511_110--Hb_004371_010 Hb_000661_200 Hb_000661_200 Hb_000544_060--Hb_000661_200 Hb_052764_060 Hb_052764_060 Hb_000544_060--Hb_052764_060 Hb_006663_040 Hb_006663_040 Hb_000544_060--Hb_006663_040 Hb_001902_060 Hb_001902_060 Hb_000544_060--Hb_001902_060 Hb_000544_060--Hb_000832_320 Hb_026198_040--Hb_001141_370 Hb_026198_040--Hb_000544_060 Hb_030827_060 Hb_030827_060 Hb_026198_040--Hb_030827_060 Hb_026198_040--Hb_000832_320 Hb_144824_010--Hb_000832_320 Hb_144824_010--Hb_001511_110 Hb_005946_170 Hb_005946_170 Hb_144824_010--Hb_005946_170 Hb_144824_010--Hb_029223_050 Hb_164010_070 Hb_164010_070 Hb_144824_010--Hb_164010_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.4899 54.6449 10.2467 8.76776 29.0082 20.6125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4184 10.2418 10.9526 14.8475 6.64392

CAGE analysis