Hb_164010_070

Information

Type -
Description -
Location Contig164010: 45418-50163
Sequence    

Annotation

kegg
ID rcu:RCOM_0522870
description Paramyosin, putative
nr
ID XP_002522782.1
description Paramyosin, putative [Ricinus communis]
swissprot
ID Q9LVQ4
description WEB family protein At5g55860 OS=Arabidopsis thaliana GN=At5g55860 PE=1 SV=1
trembl
ID B9S9W3
description Paramyosin, putative OS=Ricinus communis GN=RCOM_0522870 PE=4 SV=1
Gene Ontology
ID GO:0005886
description web family protein at5g55860-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15082: 45253-47825 , PASA_asmbl_15083: 47923-49962 , PASA_asmbl_15085: 48918-49181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164010_070 0.0 - - Paramyosin, putative [Ricinus communis]
2 Hb_000340_110 0.0987651041 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
3 Hb_144824_010 0.104346011 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
4 Hb_124677_060 0.1050962081 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_006683_040 0.1058148006 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
6 Hb_001053_030 0.1068051087 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
7 Hb_000932_070 0.1075871768 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
8 Hb_007307_030 0.1088849118 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
9 Hb_012799_120 0.1126877986 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
10 Hb_001638_040 0.1136037839 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
11 Hb_018133_030 0.118494803 - - Heme-binding protein, putative [Ricinus communis]
12 Hb_000336_140 0.1185275232 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000140_070 0.1189893014 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
14 Hb_042038_020 0.12003496 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
15 Hb_000853_030 0.1214732386 - - sucrose synthase 2 [Hevea brasiliensis]
16 Hb_001220_030 0.1219151496 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
17 Hb_000243_380 0.1235605689 - - PREDICTED: histone H1 [Jatropha curcas]
18 Hb_093084_070 0.132865935 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
19 Hb_002609_090 0.1329231233 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_000987_140 0.1349036301 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_164010_070 Hb_164010_070 Hb_000340_110 Hb_000340_110 Hb_164010_070--Hb_000340_110 Hb_144824_010 Hb_144824_010 Hb_164010_070--Hb_144824_010 Hb_124677_060 Hb_124677_060 Hb_164010_070--Hb_124677_060 Hb_006683_040 Hb_006683_040 Hb_164010_070--Hb_006683_040 Hb_001053_030 Hb_001053_030 Hb_164010_070--Hb_001053_030 Hb_000932_070 Hb_000932_070 Hb_164010_070--Hb_000932_070 Hb_029223_050 Hb_029223_050 Hb_000340_110--Hb_029223_050 Hb_001141_370 Hb_001141_370 Hb_000340_110--Hb_001141_370 Hb_001511_110 Hb_001511_110 Hb_000340_110--Hb_001511_110 Hb_000544_060 Hb_000544_060 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_000340_110--Hb_144824_010 Hb_000832_320 Hb_000832_320 Hb_144824_010--Hb_000832_320 Hb_144824_010--Hb_001511_110 Hb_005946_170 Hb_005946_170 Hb_144824_010--Hb_005946_170 Hb_144824_010--Hb_029223_050 Hb_124677_060--Hb_001053_030 Hb_002745_010 Hb_002745_010 Hb_124677_060--Hb_002745_010 Hb_001059_100 Hb_001059_100 Hb_124677_060--Hb_001059_100 Hb_000140_070 Hb_000140_070 Hb_124677_060--Hb_000140_070 Hb_001220_030 Hb_001220_030 Hb_124677_060--Hb_001220_030 Hb_124677_060--Hb_000340_110 Hb_006683_040--Hb_000932_070 Hb_018301_010 Hb_018301_010 Hb_006683_040--Hb_018301_010 Hb_006683_040--Hb_000340_110 Hb_004218_090 Hb_004218_090 Hb_006683_040--Hb_004218_090 Hb_000061_490 Hb_000061_490 Hb_006683_040--Hb_000061_490 Hb_001053_030--Hb_000340_110 Hb_001053_030--Hb_002745_010 Hb_000336_140 Hb_000336_140 Hb_001053_030--Hb_000336_140 Hb_000243_380 Hb_000243_380 Hb_001053_030--Hb_000243_380 Hb_001053_030--Hb_144824_010 Hb_007894_130 Hb_007894_130 Hb_000932_070--Hb_007894_130 Hb_000932_070--Hb_000340_110 Hb_000932_070--Hb_018301_010 Hb_000932_070--Hb_001511_110 Hb_157966_010 Hb_157966_010 Hb_000932_070--Hb_157966_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.9568 105.702 10.2497 16.8495 54.369 48.3543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7898 18.8222 28.9421 40.9023 6.45405

CAGE analysis