Hb_026198_040

Information

Type -
Description -
Location Contig26198: 93138-102386
Sequence    

Annotation

kegg
ID rcu:RCOM_0685910
description hypothetical protein
nr
ID XP_012065775.1
description PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
swissprot
ID Q6GQV7
description Erythroid differentiation-related factor 1 OS=Mus musculus GN=Edrf1 PE=2 SV=1
trembl
ID A0A067L802
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25468 PE=4 SV=1
Gene Ontology
ID GO:0005886
description erythroid differentiation-related factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27378: 93044-93490 , PASA_asmbl_27380: 96740-97013 , PASA_asmbl_27382: 97425-97673 , PASA_asmbl_27383: 97779-98120 , PASA_asmbl_27384: 99257-100546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026198_040 0.0 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
2 Hb_029223_050 0.0797483918 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
3 Hb_000340_110 0.0888212121 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
4 Hb_001141_370 0.0918039101 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
5 Hb_000544_060 0.092961138 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
6 Hb_030827_060 0.0991729488 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
7 Hb_000832_320 0.1017358748 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
8 Hb_001511_110 0.1047434317 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
9 Hb_011909_060 0.1065602029 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
10 Hb_104265_030 0.1073459697 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
11 Hb_012226_010 0.1083962488 - - PREDICTED: protein DGCR14 [Jatropha curcas]
12 Hb_000422_110 0.1100086101 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
13 Hb_006663_040 0.1101986278 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
14 Hb_144824_010 0.1104020416 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
15 Hb_003858_090 0.112288209 - - Filamin-A-interacting protein, putative [Ricinus communis]
16 Hb_009771_100 0.1127824161 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
17 Hb_015475_020 0.1141145788 - - importin beta-1, putative [Ricinus communis]
18 Hb_001902_060 0.1141910241 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
19 Hb_000327_280 0.1157202147 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
20 Hb_007193_110 0.1164965981 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]

Gene co-expression network

sample Hb_026198_040 Hb_026198_040 Hb_029223_050 Hb_029223_050 Hb_026198_040--Hb_029223_050 Hb_000340_110 Hb_000340_110 Hb_026198_040--Hb_000340_110 Hb_001141_370 Hb_001141_370 Hb_026198_040--Hb_001141_370 Hb_000544_060 Hb_000544_060 Hb_026198_040--Hb_000544_060 Hb_030827_060 Hb_030827_060 Hb_026198_040--Hb_030827_060 Hb_000832_320 Hb_000832_320 Hb_026198_040--Hb_000832_320 Hb_029223_050--Hb_000340_110 Hb_001511_110 Hb_001511_110 Hb_029223_050--Hb_001511_110 Hb_029223_050--Hb_001141_370 Hb_029223_050--Hb_000544_060 Hb_104265_030 Hb_104265_030 Hb_029223_050--Hb_104265_030 Hb_000340_110--Hb_001141_370 Hb_000340_110--Hb_001511_110 Hb_000340_110--Hb_000544_060 Hb_144824_010 Hb_144824_010 Hb_000340_110--Hb_144824_010 Hb_001141_370--Hb_000544_060 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001243_060 Hb_001243_060 Hb_001141_370--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_001141_370--Hb_009771_100 Hb_003858_090 Hb_003858_090 Hb_001141_370--Hb_003858_090 Hb_000661_200 Hb_000661_200 Hb_000544_060--Hb_000661_200 Hb_052764_060 Hb_052764_060 Hb_000544_060--Hb_052764_060 Hb_006663_040 Hb_006663_040 Hb_000544_060--Hb_006663_040 Hb_001902_060 Hb_001902_060 Hb_000544_060--Hb_001902_060 Hb_000544_060--Hb_000832_320 Hb_000422_110 Hb_000422_110 Hb_030827_060--Hb_000422_110 Hb_030827_060--Hb_104265_030 Hb_018133_030 Hb_018133_030 Hb_030827_060--Hb_018133_030 Hb_004449_050 Hb_004449_050 Hb_030827_060--Hb_004449_050 Hb_002999_060 Hb_002999_060 Hb_030827_060--Hb_002999_060 Hb_000832_320--Hb_006663_040 Hb_018133_050 Hb_018133_050 Hb_000832_320--Hb_018133_050 Hb_004480_040 Hb_004480_040 Hb_000832_320--Hb_004480_040 Hb_000832_320--Hb_052764_060 Hb_000959_040 Hb_000959_040 Hb_000832_320--Hb_000959_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.73073 20.6825 4.48479 3.31362 11.2217 8.22799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82481 2.6273 4.34596 3.24084 3.922

CAGE analysis