Hb_001902_060

Information

Type -
Description -
Location Contig1902: 47639-54021
Sequence    

Annotation

kegg
ID rcu:RCOM_1583140
description receptor protein kinase, putative
nr
ID XP_012090232.1
description PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
swissprot
ID Q94A51
description U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1
trembl
ID A0A067JHK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26089 PE=4 SV=1
Gene Ontology
ID GO:0004672
description u-box domain-containing protein 32 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18965: 47826-49161 , PASA_asmbl_18966: 49801-51672 , PASA_asmbl_18967: 52601-54032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_060 0.0 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
2 Hb_000152_340 0.0623598331 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
3 Hb_000544_060 0.0741762558 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
4 Hb_000920_250 0.0770198116 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_0655500 [Ricinus communis]
5 Hb_002499_070 0.0786574044 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
6 Hb_007676_100 0.0813208058 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
7 Hb_001141_370 0.0815518291 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
8 Hb_003858_090 0.0833353774 - - Filamin-A-interacting protein, putative [Ricinus communis]
9 Hb_000032_010 0.0864073757 - - crooked neck protein, putative [Ricinus communis]
10 Hb_004659_080 0.0872714658 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
11 Hb_000820_120 0.0878995625 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
12 Hb_001059_100 0.0894903062 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
13 Hb_000753_100 0.0909837843 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
14 Hb_003040_020 0.0913033209 - - PREDICTED: protein cereblon [Jatropha curcas]
15 Hb_001221_160 0.0914708547 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
16 Hb_000953_030 0.0917361759 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
17 Hb_019153_020 0.0927536451 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
18 Hb_000441_070 0.0944601278 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
19 Hb_000331_330 0.0952877868 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
20 Hb_001718_090 0.0967366656 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]

Gene co-expression network

sample Hb_001902_060 Hb_001902_060 Hb_000152_340 Hb_000152_340 Hb_001902_060--Hb_000152_340 Hb_000544_060 Hb_000544_060 Hb_001902_060--Hb_000544_060 Hb_000920_250 Hb_000920_250 Hb_001902_060--Hb_000920_250 Hb_002499_070 Hb_002499_070 Hb_001902_060--Hb_002499_070 Hb_007676_100 Hb_007676_100 Hb_001902_060--Hb_007676_100 Hb_001141_370 Hb_001141_370 Hb_001902_060--Hb_001141_370 Hb_000953_030 Hb_000953_030 Hb_000152_340--Hb_000953_030 Hb_000140_080 Hb_000140_080 Hb_000152_340--Hb_000140_080 Hb_000032_010 Hb_000032_010 Hb_000152_340--Hb_000032_010 Hb_000116_060 Hb_000116_060 Hb_000152_340--Hb_000116_060 Hb_003858_090 Hb_003858_090 Hb_000152_340--Hb_003858_090 Hb_000544_060--Hb_001141_370 Hb_000661_200 Hb_000661_200 Hb_000544_060--Hb_000661_200 Hb_052764_060 Hb_052764_060 Hb_000544_060--Hb_052764_060 Hb_006663_040 Hb_006663_040 Hb_000544_060--Hb_006663_040 Hb_000832_320 Hb_000832_320 Hb_000544_060--Hb_000832_320 Hb_000920_250--Hb_000544_060 Hb_000465_480 Hb_000465_480 Hb_000920_250--Hb_000465_480 Hb_000920_250--Hb_001141_370 Hb_001117_190 Hb_001117_190 Hb_000920_250--Hb_001117_190 Hb_001059_100 Hb_001059_100 Hb_000920_250--Hb_001059_100 Hb_004162_280 Hb_004162_280 Hb_002499_070--Hb_004162_280 Hb_144787_030 Hb_144787_030 Hb_002499_070--Hb_144787_030 Hb_005895_040 Hb_005895_040 Hb_002499_070--Hb_005895_040 Hb_002411_120 Hb_002411_120 Hb_002499_070--Hb_002411_120 Hb_002499_070--Hb_000152_340 Hb_004659_080 Hb_004659_080 Hb_007676_100--Hb_004659_080 Hb_000959_040 Hb_000959_040 Hb_007676_100--Hb_000959_040 Hb_006252_020 Hb_006252_020 Hb_007676_100--Hb_006252_020 Hb_000331_330 Hb_000331_330 Hb_007676_100--Hb_000331_330 Hb_002188_110 Hb_002188_110 Hb_007676_100--Hb_002188_110 Hb_004128_050 Hb_004128_050 Hb_007676_100--Hb_004128_050 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001243_060 Hb_001243_060 Hb_001141_370--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_001141_370--Hb_009771_100 Hb_000340_110 Hb_000340_110 Hb_001141_370--Hb_000340_110 Hb_001141_370--Hb_003858_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9931 26.7179 8.73355 5.78623 27.5739 17.5166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.43538 7.28637 9.25123 8.72077 6.57997

CAGE analysis