Hb_000152_340

Information

Type -
Description -
Location Contig152: 290676-295697
Sequence    

Annotation

kegg
ID rcu:RCOM_0758650
description rRNA-processing protein EBP2, putative (EC:1.3.1.74)
nr
ID XP_012085961.1
description PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
swissprot
ID Q9LUJ5
description Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana GN=At3g22660 PE=2 SV=1
trembl
ID B9SKC1
description rRNA-processing protein EBP2, putative OS=Ricinus communis GN=RCOM_0758650 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable rrna-processing protein ebp2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12983: 290819-293023
cDNA
(Sanger)
(ID:Location)		 033_P11.ab1: 291300-293023

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_340 0.0 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
2 Hb_001902_060 0.0623598331 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
3 Hb_000953_030 0.0742926018 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
4 Hb_000140_080 0.0759414598 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
5 Hb_000032_010 0.0780684954 - - crooked neck protein, putative [Ricinus communis]
6 Hb_000116_060 0.0795442047 - - plant ubiquilin, putative [Ricinus communis]
7 Hb_003858_090 0.0815641644 - - Filamin-A-interacting protein, putative [Ricinus communis]
8 Hb_000136_090 0.0817864204 - - programmed cell death protein, putative [Ricinus communis]
9 Hb_004635_050 0.0818880074 - - nucleolar phosphoprotein, putative [Ricinus communis]
10 Hb_002499_070 0.0821175018 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
11 Hb_001141_370 0.0826254289 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
12 Hb_031527_020 0.0834488027 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
13 Hb_003777_160 0.0834582237 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
14 Hb_000046_010 0.0841700454 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
15 Hb_005539_190 0.0853064311 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
16 Hb_001718_090 0.0855620512 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
17 Hb_000820_120 0.0857670436 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
18 Hb_000169_130 0.0857717081 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
19 Hb_000487_420 0.0858238015 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
20 Hb_001243_060 0.0860319864 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_340 Hb_000152_340 Hb_001902_060 Hb_001902_060 Hb_000152_340--Hb_001902_060 Hb_000953_030 Hb_000953_030 Hb_000152_340--Hb_000953_030 Hb_000140_080 Hb_000140_080 Hb_000152_340--Hb_000140_080 Hb_000032_010 Hb_000032_010 Hb_000152_340--Hb_000032_010 Hb_000116_060 Hb_000116_060 Hb_000152_340--Hb_000116_060 Hb_003858_090 Hb_003858_090 Hb_000152_340--Hb_003858_090 Hb_000544_060 Hb_000544_060 Hb_001902_060--Hb_000544_060 Hb_000920_250 Hb_000920_250 Hb_001902_060--Hb_000920_250 Hb_002499_070 Hb_002499_070 Hb_001902_060--Hb_002499_070 Hb_007676_100 Hb_007676_100 Hb_001902_060--Hb_007676_100 Hb_001141_370 Hb_001141_370 Hb_001902_060--Hb_001141_370 Hb_001946_300 Hb_001946_300 Hb_000953_030--Hb_001946_300 Hb_005539_190 Hb_005539_190 Hb_000953_030--Hb_005539_190 Hb_004635_050 Hb_004635_050 Hb_000953_030--Hb_004635_050 Hb_102129_070 Hb_102129_070 Hb_000953_030--Hb_102129_070 Hb_002326_020 Hb_002326_020 Hb_000953_030--Hb_002326_020 Hb_000224_060 Hb_000224_060 Hb_000140_080--Hb_000224_060 Hb_033095_020 Hb_033095_020 Hb_000140_080--Hb_033095_020 Hb_011386_040 Hb_011386_040 Hb_000140_080--Hb_011386_040 Hb_000261_220 Hb_000261_220 Hb_000140_080--Hb_000261_220 Hb_031527_020 Hb_031527_020 Hb_000140_080--Hb_031527_020 Hb_019153_020 Hb_019153_020 Hb_000032_010--Hb_019153_020 Hb_003040_020 Hb_003040_020 Hb_000032_010--Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_000032_010--Hb_004429_160 Hb_000753_100 Hb_000753_100 Hb_000032_010--Hb_000753_100 Hb_000191_130 Hb_000191_130 Hb_000032_010--Hb_000191_130 Hb_000856_140 Hb_000856_140 Hb_000032_010--Hb_000856_140 Hb_001243_060 Hb_001243_060 Hb_000116_060--Hb_001243_060 Hb_003680_230 Hb_003680_230 Hb_000116_060--Hb_003680_230 Hb_000162_280 Hb_000162_280 Hb_000116_060--Hb_000162_280 Hb_001377_070 Hb_001377_070 Hb_000116_060--Hb_001377_070 Hb_009112_010 Hb_009112_010 Hb_000116_060--Hb_009112_010 Hb_000116_060--Hb_003040_020 Hb_015475_020 Hb_015475_020 Hb_003858_090--Hb_015475_020 Hb_001221_160 Hb_001221_160 Hb_003858_090--Hb_001221_160 Hb_003858_090--Hb_001243_060 Hb_003858_090--Hb_000753_100 Hb_003858_090--Hb_001141_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
163.105 215.241 81.8649 64.7206 218.643 142.975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.8986 85.8293 65.3127 82.2172 51.0976

CAGE analysis