Hb_000856_140

Information

Type -
Description -
Location Contig856: 105945-115267
Sequence    

Annotation

kegg
ID rcu:RCOM_1513330
description hypothetical protein
nr
ID XP_012080189.1
description PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
swissprot
ID Q8BL06
description Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=2 SV=2
trembl
ID A0A067K4P4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11567 PE=4 SV=1
Gene Ontology
ID GO:0036459
description ubiquitin carboxyl-terminal hydrolase-related protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60578: 105974-109819 , PASA_asmbl_60579: 110658-114678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_140 0.0 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
2 Hb_000032_010 0.0622955796 - - crooked neck protein, putative [Ricinus communis]
3 Hb_019153_020 0.0627546545 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
4 Hb_003040_020 0.066585521 - - PREDICTED: protein cereblon [Jatropha curcas]
5 Hb_004429_160 0.0672710982 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
6 Hb_148909_030 0.0702297936 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
7 Hb_004627_060 0.0722510206 - - PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
8 Hb_104061_020 0.0724218218 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
9 Hb_067193_010 0.0728137902 - - -
10 Hb_004659_080 0.0749340398 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
11 Hb_010315_090 0.0759527086 - - suppressor of ty, putative [Ricinus communis]
12 Hb_000505_020 0.0761656288 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
13 Hb_006252_020 0.0769038989 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
14 Hb_001623_480 0.0770060836 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
15 Hb_000010_360 0.0773062146 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
16 Hb_001307_080 0.0776922227 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
17 Hb_002329_040 0.0777217351 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
18 Hb_004453_110 0.0786508439 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
19 Hb_000191_130 0.0794170385 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
20 Hb_001417_050 0.0799505563 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]

Gene co-expression network

sample Hb_000856_140 Hb_000856_140 Hb_000032_010 Hb_000032_010 Hb_000856_140--Hb_000032_010 Hb_019153_020 Hb_019153_020 Hb_000856_140--Hb_019153_020 Hb_003040_020 Hb_003040_020 Hb_000856_140--Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_000856_140--Hb_004429_160 Hb_148909_030 Hb_148909_030 Hb_000856_140--Hb_148909_030 Hb_004627_060 Hb_004627_060 Hb_000856_140--Hb_004627_060 Hb_000032_010--Hb_019153_020 Hb_000032_010--Hb_003040_020 Hb_000032_010--Hb_004429_160 Hb_000753_100 Hb_000753_100 Hb_000032_010--Hb_000753_100 Hb_000191_130 Hb_000191_130 Hb_000032_010--Hb_000191_130 Hb_140049_020 Hb_140049_020 Hb_019153_020--Hb_140049_020 Hb_000417_160 Hb_000417_160 Hb_019153_020--Hb_000417_160 Hb_002221_050 Hb_002221_050 Hb_019153_020--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_019153_020--Hb_000529_260 Hb_010315_090 Hb_010315_090 Hb_019153_020--Hb_010315_090 Hb_003040_020--Hb_004429_160 Hb_005539_190 Hb_005539_190 Hb_003040_020--Hb_005539_190 Hb_003040_020--Hb_000191_130 Hb_003040_020--Hb_019153_020 Hb_004429_160--Hb_000191_130 Hb_001307_080 Hb_001307_080 Hb_004429_160--Hb_001307_080 Hb_000062_470 Hb_000062_470 Hb_004429_160--Hb_000062_470 Hb_000935_090 Hb_000935_090 Hb_004429_160--Hb_000935_090 Hb_005488_150 Hb_005488_150 Hb_148909_030--Hb_005488_150 Hb_116929_010 Hb_116929_010 Hb_148909_030--Hb_116929_010 Hb_111985_080 Hb_111985_080 Hb_148909_030--Hb_111985_080 Hb_133047_010 Hb_133047_010 Hb_148909_030--Hb_133047_010 Hb_002392_030 Hb_002392_030 Hb_148909_030--Hb_002392_030 Hb_000010_360 Hb_000010_360 Hb_148909_030--Hb_000010_360 Hb_000088_130 Hb_000088_130 Hb_004627_060--Hb_000088_130 Hb_002107_070 Hb_002107_070 Hb_004627_060--Hb_002107_070 Hb_104061_020 Hb_104061_020 Hb_004627_060--Hb_104061_020 Hb_007635_030 Hb_007635_030 Hb_004627_060--Hb_007635_030 Hb_002329_040 Hb_002329_040 Hb_004627_060--Hb_002329_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.678 16.1335 8.0854 7.29029 23.5893 14.7367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.63857 4.99364 7.92679 13.6775 9.88945

CAGE analysis