Hb_005539_190

Information

Type -
Description -
Location Contig5539: 128705-136269
Sequence    

Annotation

kegg
ID tcc:TCM_010249
description Pre-mRNA processing ribonucleoprotein binding region-containing protein isoform 1
nr
ID XP_012085347.1
description PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
swissprot
ID Q8CCF0
description U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=1 SV=3
trembl
ID A0A067K434
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17722 PE=4 SV=1
Gene Ontology
ID GO:0046540
description u4 u6 small nuclear ribonucleoprotein prp31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48382: 128650-133322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_190 0.0 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
2 Hb_140049_020 0.0542513949 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
3 Hb_003040_020 0.0609525652 - - PREDICTED: protein cereblon [Jatropha curcas]
4 Hb_003540_160 0.0629716929 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
5 Hb_000032_010 0.0673188713 - - crooked neck protein, putative [Ricinus communis]
6 Hb_019153_020 0.0707121353 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
7 Hb_140049_030 0.0741554263 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
8 Hb_004429_160 0.0748284897 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
9 Hb_001117_190 0.0776788693 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
10 Hb_000753_100 0.0778058427 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
11 Hb_000313_340 0.0778186386 - - DNA repair protein xp-E, putative [Ricinus communis]
12 Hb_000300_360 0.079174596 - - PREDICTED: exosome component 10 [Jatropha curcas]
13 Hb_005188_060 0.0808105284 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_000953_030 0.0811215787 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
15 Hb_001307_080 0.0822886813 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
16 Hb_102129_070 0.0830956406 - - PREDICTED: coiled-coil domain-containing protein 124 [Cucumis melo]
17 Hb_000329_130 0.0833404836 - - beta-tubulin cofactor d, putative [Ricinus communis]
18 Hb_007229_040 0.0840594332 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
19 Hb_004635_050 0.0845487833 - - nucleolar phosphoprotein, putative [Ricinus communis]
20 Hb_000120_610 0.0847655772 - - mitotic control protein dis3, putative [Ricinus communis]

Gene co-expression network

sample Hb_005539_190 Hb_005539_190 Hb_140049_020 Hb_140049_020 Hb_005539_190--Hb_140049_020 Hb_003040_020 Hb_003040_020 Hb_005539_190--Hb_003040_020 Hb_003540_160 Hb_003540_160 Hb_005539_190--Hb_003540_160 Hb_000032_010 Hb_000032_010 Hb_005539_190--Hb_000032_010 Hb_019153_020 Hb_019153_020 Hb_005539_190--Hb_019153_020 Hb_140049_030 Hb_140049_030 Hb_005539_190--Hb_140049_030 Hb_000313_340 Hb_000313_340 Hb_140049_020--Hb_000313_340 Hb_140049_020--Hb_019153_020 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130 Hb_004429_160 Hb_004429_160 Hb_003040_020--Hb_004429_160 Hb_003040_020--Hb_000032_010 Hb_000191_130 Hb_000191_130 Hb_003040_020--Hb_000191_130 Hb_003040_020--Hb_019153_020 Hb_000856_140 Hb_000856_140 Hb_003040_020--Hb_000856_140 Hb_000317_150 Hb_000317_150 Hb_003540_160--Hb_000317_150 Hb_001117_190 Hb_001117_190 Hb_003540_160--Hb_001117_190 Hb_003540_160--Hb_140049_020 Hb_000753_100 Hb_000753_100 Hb_003540_160--Hb_000753_100 Hb_007943_120 Hb_007943_120 Hb_003540_160--Hb_007943_120 Hb_000032_010--Hb_019153_020 Hb_000032_010--Hb_004429_160 Hb_000032_010--Hb_000753_100 Hb_000032_010--Hb_000191_130 Hb_000032_010--Hb_000856_140 Hb_000417_160 Hb_000417_160 Hb_019153_020--Hb_000417_160 Hb_002221_050 Hb_002221_050 Hb_019153_020--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_019153_020--Hb_000529_260 Hb_010315_090 Hb_010315_090 Hb_019153_020--Hb_010315_090 Hb_002045_150 Hb_002045_150 Hb_140049_030--Hb_002045_150 Hb_000771_180 Hb_000771_180 Hb_140049_030--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_140049_030--Hb_000300_360 Hb_050847_020 Hb_050847_020 Hb_140049_030--Hb_050847_020 Hb_140049_030--Hb_140049_020 Hb_001545_200 Hb_001545_200 Hb_140049_030--Hb_001545_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.6542 88.2934 56.0072 31.8238 124.137 81.4433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.795 28.184 30.859 56.7963 27.276

CAGE analysis