Hb_001545_200

Information

Type -
Description -
Location Contig1545: 242396-247007
Sequence    

Annotation

kegg
ID rcu:RCOM_0297690
description oxidoreductase, putative
nr
ID XP_012082192.1
description PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
swissprot
ID Q9SZ83
description Uncharacterized oxidoreductase At4g09670 OS=Arabidopsis thaliana GN=At4g09670 PE=1 SV=1
trembl
ID A0A067JZJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19450 PE=4 SV=1
Gene Ontology
ID GO:0016491
description uncharacterized oxidoreductase at4g09670

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13380: 242432-246936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_200 0.0 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
2 Hb_001828_160 0.0724464399 - - hypothetical protein F775_31105 [Aegilops tauschii]
3 Hb_140049_030 0.0741410951 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
4 Hb_021422_010 0.075723412 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
5 Hb_002157_260 0.0801473456 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
6 Hb_005332_020 0.081141305 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_001307_080 0.0813588921 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
8 Hb_138842_010 0.0823578525 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
9 Hb_005965_030 0.083531068 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
10 Hb_004055_150 0.086059008 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002045_150 0.0874986129 - - histone acetyltransferase gcn5, putative [Ricinus communis]
12 Hb_050847_020 0.0879532611 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_006960_050 0.0889197858 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
14 Hb_008887_020 0.0895797325 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
15 Hb_002093_030 0.0901069558 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
16 Hb_000032_490 0.0911209877 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
17 Hb_004785_100 0.0914885173 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000329_130 0.0916880594 - - beta-tubulin cofactor d, putative [Ricinus communis]
19 Hb_000771_180 0.0917709188 - - polypyrimidine tract binding protein, putative [Ricinus communis]
20 Hb_003605_130 0.0918771851 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]

Gene co-expression network

sample Hb_001545_200 Hb_001545_200 Hb_001828_160 Hb_001828_160 Hb_001545_200--Hb_001828_160 Hb_140049_030 Hb_140049_030 Hb_001545_200--Hb_140049_030 Hb_021422_010 Hb_021422_010 Hb_001545_200--Hb_021422_010 Hb_002157_260 Hb_002157_260 Hb_001545_200--Hb_002157_260 Hb_005332_020 Hb_005332_020 Hb_001545_200--Hb_005332_020 Hb_001307_080 Hb_001307_080 Hb_001545_200--Hb_001307_080 Hb_000207_310 Hb_000207_310 Hb_001828_160--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_001828_160--Hb_000913_050 Hb_001828_160--Hb_021422_010 Hb_006620_020 Hb_006620_020 Hb_001828_160--Hb_006620_020 Hb_000116_180 Hb_000116_180 Hb_001828_160--Hb_000116_180 Hb_002045_150 Hb_002045_150 Hb_140049_030--Hb_002045_150 Hb_000771_180 Hb_000771_180 Hb_140049_030--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_140049_030--Hb_000300_360 Hb_050847_020 Hb_050847_020 Hb_140049_030--Hb_050847_020 Hb_140049_020 Hb_140049_020 Hb_140049_030--Hb_140049_020 Hb_006623_020 Hb_006623_020 Hb_021422_010--Hb_006623_020 Hb_003018_060 Hb_003018_060 Hb_021422_010--Hb_003018_060 Hb_000032_490 Hb_000032_490 Hb_021422_010--Hb_000032_490 Hb_000808_250 Hb_000808_250 Hb_021422_010--Hb_000808_250 Hb_006960_050 Hb_006960_050 Hb_021422_010--Hb_006960_050 Hb_005965_030 Hb_005965_030 Hb_002157_260--Hb_005965_030 Hb_002157_260--Hb_002045_150 Hb_000160_350 Hb_000160_350 Hb_002157_260--Hb_000160_350 Hb_006452_160 Hb_006452_160 Hb_002157_260--Hb_006452_160 Hb_002157_260--Hb_006960_050 Hb_001408_100 Hb_001408_100 Hb_002157_260--Hb_001408_100 Hb_001953_150 Hb_001953_150 Hb_005332_020--Hb_001953_150 Hb_002422_050 Hb_002422_050 Hb_005332_020--Hb_002422_050 Hb_008887_020 Hb_008887_020 Hb_005332_020--Hb_008887_020 Hb_000152_260 Hb_000152_260 Hb_005332_020--Hb_000152_260 Hb_001143_250 Hb_001143_250 Hb_005332_020--Hb_001143_250 Hb_002374_260 Hb_002374_260 Hb_005332_020--Hb_002374_260 Hb_004429_160 Hb_004429_160 Hb_001307_080--Hb_004429_160 Hb_000191_130 Hb_000191_130 Hb_001307_080--Hb_000191_130 Hb_006658_040 Hb_006658_040 Hb_001307_080--Hb_006658_040 Hb_000010_360 Hb_000010_360 Hb_001307_080--Hb_000010_360 Hb_004209_020 Hb_004209_020 Hb_001307_080--Hb_004209_020 Hb_003040_020 Hb_003040_020 Hb_001307_080--Hb_003040_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.1223 40.2618 39.9092 21.7324 71.329 48.9399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6453 30.61 24.2213 34.3232 29.2207

CAGE analysis