Hb_050847_020

Information

Type -
Description -
Location Contig50847: 7475-13056
Sequence    

Annotation

kegg
ID rcu:RCOM_0690410
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_002520902.1
description dead box ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q84TG1
description DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana GN=RH57 PE=2 SV=1
trembl
ID B9S4I3
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0690410 PE=4 SV=1
Gene Ontology
ID GO:0016787
description dead-box atp-dependent rna helicase 57-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46200: 7603-13010 , PASA_asmbl_46201: 7782-13010 , PASA_asmbl_46202: 7782-9520 , PASA_asmbl_46203: 10386-10637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050847_020 0.0 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_002783_310 0.0520623108 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
3 Hb_000771_180 0.0605572101 - - polypyrimidine tract binding protein, putative [Ricinus communis]
4 Hb_002045_150 0.0660723688 - - histone acetyltransferase gcn5, putative [Ricinus communis]
5 Hb_011386_040 0.0665536919 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
6 Hb_140049_030 0.0710432847 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
7 Hb_000136_090 0.0758157855 - - programmed cell death protein, putative [Ricinus communis]
8 Hb_000059_140 0.079170784 - - rnase h, putative [Ricinus communis]
9 Hb_000334_270 0.081155535 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
10 Hb_000270_460 0.0812960683 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
11 Hb_000300_360 0.0821758919 - - PREDICTED: exosome component 10 [Jatropha curcas]
12 Hb_006355_010 0.0857949324 - - PREDICTED: protein NLRC3 [Jatropha curcas]
13 Hb_007520_030 0.0878698558 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
14 Hb_000768_110 0.0879421116 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
15 Hb_001545_200 0.0879532611 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
16 Hb_032278_020 0.0880878864 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
17 Hb_032202_110 0.0883081676 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_001799_050 0.0885262311 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
19 Hb_008554_120 0.0894632824 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
20 Hb_002157_260 0.0900598447 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]

Gene co-expression network

sample Hb_050847_020 Hb_050847_020 Hb_002783_310 Hb_002783_310 Hb_050847_020--Hb_002783_310 Hb_000771_180 Hb_000771_180 Hb_050847_020--Hb_000771_180 Hb_002045_150 Hb_002045_150 Hb_050847_020--Hb_002045_150 Hb_011386_040 Hb_011386_040 Hb_050847_020--Hb_011386_040 Hb_140049_030 Hb_140049_030 Hb_050847_020--Hb_140049_030 Hb_000136_090 Hb_000136_090 Hb_050847_020--Hb_000136_090 Hb_002783_310--Hb_000771_180 Hb_007520_030 Hb_007520_030 Hb_002783_310--Hb_007520_030 Hb_000334_270 Hb_000334_270 Hb_002783_310--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_002783_310--Hb_000664_070 Hb_000046_010 Hb_000046_010 Hb_002783_310--Hb_000046_010 Hb_000160_350 Hb_000160_350 Hb_000771_180--Hb_000160_350 Hb_000771_180--Hb_140049_030 Hb_000771_180--Hb_000334_270 Hb_000771_180--Hb_000664_070 Hb_002157_260 Hb_002157_260 Hb_002045_150--Hb_002157_260 Hb_002045_150--Hb_140049_030 Hb_002045_150--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_002045_150--Hb_000300_360 Hb_006452_160 Hb_006452_160 Hb_002045_150--Hb_006452_160 Hb_032202_110 Hb_032202_110 Hb_011386_040--Hb_032202_110 Hb_011386_040--Hb_000771_180 Hb_000140_080 Hb_000140_080 Hb_011386_040--Hb_000140_080 Hb_011386_040--Hb_002045_150 Hb_011386_040--Hb_000136_090 Hb_140049_030--Hb_000300_360 Hb_140049_020 Hb_140049_020 Hb_140049_030--Hb_140049_020 Hb_001545_200 Hb_001545_200 Hb_140049_030--Hb_001545_200 Hb_012180_050 Hb_012180_050 Hb_000136_090--Hb_012180_050 Hb_000363_130 Hb_000363_130 Hb_000136_090--Hb_000363_130 Hb_001028_070 Hb_001028_070 Hb_000136_090--Hb_001028_070 Hb_000136_090--Hb_000300_360 Hb_006252_020 Hb_006252_020 Hb_000136_090--Hb_006252_020 Hb_000120_610 Hb_000120_610 Hb_000136_090--Hb_000120_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.9304 16.8845 11.9526 8.55155 22.4149 19.6209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.26628 13.3554 6.78105 15.3262 5.73214

CAGE analysis