Hb_001028_070

Information

Type -
Description -
Location Contig1028: 91567-110662
Sequence    

Annotation

kegg
ID rcu:RCOM_0546150
description wd40 protein, putative
nr
ID XP_012075113.1
description PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
swissprot
ID Q7ZVR1
description WD repeat-containing protein 75 OS=Danio rerio GN=wdr75 PE=2 SV=2
trembl
ID A0A067KK46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10347 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01138: 91610-110647
cDNA
(Sanger)
(ID:Location)		 026_F07.ab1: 110197-110647

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001028_070 0.0 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
2 Hb_001221_150 0.0691044356 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
3 Hb_000567_010 0.0693851675 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
4 Hb_004970_160 0.0697840684 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
5 Hb_000136_090 0.0728053469 - - programmed cell death protein, putative [Ricinus communis]
6 Hb_000120_610 0.0785720467 - - mitotic control protein dis3, putative [Ricinus communis]
7 Hb_001417_050 0.0787480801 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
8 Hb_000331_190 0.0806500992 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
9 Hb_140049_020 0.0816088846 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
10 Hb_000594_020 0.0824412802 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
11 Hb_004899_070 0.0843128813 - - PREDICTED: RRP12-like protein [Jatropha curcas]
12 Hb_000329_130 0.0845003028 - - beta-tubulin cofactor d, putative [Ricinus communis]
13 Hb_000347_570 0.0846388617 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
14 Hb_000264_100 0.0851536092 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000239_070 0.085548123 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
16 Hb_000227_380 0.0858859661 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
17 Hb_005462_020 0.086071223 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
18 Hb_003124_130 0.0864450521 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
19 Hb_002471_210 0.0866618936 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
20 Hb_020665_030 0.0871458422 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001028_070 Hb_001028_070 Hb_001221_150 Hb_001221_150 Hb_001028_070--Hb_001221_150 Hb_000567_010 Hb_000567_010 Hb_001028_070--Hb_000567_010 Hb_004970_160 Hb_004970_160 Hb_001028_070--Hb_004970_160 Hb_000136_090 Hb_000136_090 Hb_001028_070--Hb_000136_090 Hb_000120_610 Hb_000120_610 Hb_001028_070--Hb_000120_610 Hb_001417_050 Hb_001417_050 Hb_001028_070--Hb_001417_050 Hb_067193_010 Hb_067193_010 Hb_001221_150--Hb_067193_010 Hb_001221_150--Hb_000120_610 Hb_004659_080 Hb_004659_080 Hb_001221_150--Hb_004659_080 Hb_000594_020 Hb_000594_020 Hb_001221_150--Hb_000594_020 Hb_001221_150--Hb_001417_050 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_005494_020 Hb_005494_020 Hb_000567_010--Hb_005494_020 Hb_147737_010 Hb_147737_010 Hb_000567_010--Hb_147737_010 Hb_000768_110 Hb_000768_110 Hb_000567_010--Hb_000768_110 Hb_000331_190 Hb_000331_190 Hb_000567_010--Hb_000331_190 Hb_000120_620 Hb_000120_620 Hb_004970_160--Hb_000120_620 Hb_004899_070 Hb_004899_070 Hb_004970_160--Hb_004899_070 Hb_005462_020 Hb_005462_020 Hb_004970_160--Hb_005462_020 Hb_004970_160--Hb_000594_020 Hb_004970_160--Hb_000120_610 Hb_012180_050 Hb_012180_050 Hb_000136_090--Hb_012180_050 Hb_000363_130 Hb_000363_130 Hb_000136_090--Hb_000363_130 Hb_000300_360 Hb_000300_360 Hb_000136_090--Hb_000300_360 Hb_006252_020 Hb_006252_020 Hb_000136_090--Hb_006252_020 Hb_000136_090--Hb_000120_610 Hb_000264_100 Hb_000264_100 Hb_000120_610--Hb_000264_100 Hb_000120_610--Hb_000594_020 Hb_002659_060 Hb_002659_060 Hb_000120_610--Hb_002659_060 Hb_140049_020 Hb_140049_020 Hb_000120_610--Hb_140049_020 Hb_000120_610--Hb_004899_070 Hb_001493_040 Hb_001493_040 Hb_001417_050--Hb_001493_040 Hb_000160_290 Hb_000160_290 Hb_001417_050--Hb_000160_290 Hb_010315_090 Hb_010315_090 Hb_001417_050--Hb_010315_090 Hb_002422_050 Hb_002422_050 Hb_001417_050--Hb_002422_050 Hb_001417_050--Hb_006252_020 Hb_000796_190 Hb_000796_190 Hb_001417_050--Hb_000796_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2134 15.6643 7.3994 5.22653 22.6536 24.776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.70606 7.02882 5.7858 14.4462 7.33458

CAGE analysis