Hb_001221_150

Information

Type -
Description -
Location Contig1221: 104960-108563
Sequence    

Annotation

kegg
ID rcu:RCOM_1506390
description AMP-activated protein kinase, gamma regulatory subunit, putative
nr
ID XP_002511194.1
description AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
swissprot
ID Q8LBB2
description SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2
trembl
ID B9RAG9
description AMP-activated protein kinase, gamma regulatory subunit, putative OS=Ricinus communis GN=RCOM_1506390 PE=4 SV=1
Gene Ontology
ID GO:0009505
description snf1-related protein kinase regulatory subunit gamma-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06710: 104958-108490 , PASA_asmbl_06711: 107503-107922
cDNA
(Sanger)
(ID:Location)		 051_G04.ab1: 104961-105508

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_150 0.0 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
2 Hb_067193_010 0.0635539888 - - -
3 Hb_001028_070 0.0691044356 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
4 Hb_000120_610 0.0757608441 - - mitotic control protein dis3, putative [Ricinus communis]
5 Hb_004659_080 0.0764639282 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
6 Hb_000594_020 0.0841332645 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
7 Hb_001417_050 0.0843315129 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
8 Hb_006252_020 0.0843555542 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
9 Hb_004970_160 0.0847775416 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
10 Hb_000160_290 0.087974931 - - unnamed protein product [Vitis vinifera]
11 Hb_005494_020 0.0880910915 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
12 Hb_000567_010 0.0882311583 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
13 Hb_006478_060 0.0886494057 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
14 Hb_005731_090 0.0888828804 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
15 Hb_000856_140 0.0889446139 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
16 Hb_000510_310 0.0890880259 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
17 Hb_000209_070 0.0918267049 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
18 Hb_000529_260 0.0935058199 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
19 Hb_174821_010 0.0935650122 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
20 Hb_001621_130 0.0938872216 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_150 Hb_001221_150 Hb_067193_010 Hb_067193_010 Hb_001221_150--Hb_067193_010 Hb_001028_070 Hb_001028_070 Hb_001221_150--Hb_001028_070 Hb_000120_610 Hb_000120_610 Hb_001221_150--Hb_000120_610 Hb_004659_080 Hb_004659_080 Hb_001221_150--Hb_004659_080 Hb_000594_020 Hb_000594_020 Hb_001221_150--Hb_000594_020 Hb_001417_050 Hb_001417_050 Hb_001221_150--Hb_001417_050 Hb_005731_090 Hb_005731_090 Hb_067193_010--Hb_005731_090 Hb_000856_140 Hb_000856_140 Hb_067193_010--Hb_000856_140 Hb_001307_080 Hb_001307_080 Hb_067193_010--Hb_001307_080 Hb_004453_110 Hb_004453_110 Hb_067193_010--Hb_004453_110 Hb_003040_020 Hb_003040_020 Hb_067193_010--Hb_003040_020 Hb_000567_010 Hb_000567_010 Hb_001028_070--Hb_000567_010 Hb_004970_160 Hb_004970_160 Hb_001028_070--Hb_004970_160 Hb_000136_090 Hb_000136_090 Hb_001028_070--Hb_000136_090 Hb_001028_070--Hb_000120_610 Hb_001028_070--Hb_001417_050 Hb_000264_100 Hb_000264_100 Hb_000120_610--Hb_000264_100 Hb_000120_610--Hb_000594_020 Hb_002659_060 Hb_002659_060 Hb_000120_610--Hb_002659_060 Hb_140049_020 Hb_140049_020 Hb_000120_610--Hb_140049_020 Hb_004899_070 Hb_004899_070 Hb_000120_610--Hb_004899_070 Hb_000120_610--Hb_004970_160 Hb_006252_020 Hb_006252_020 Hb_004659_080--Hb_006252_020 Hb_007676_100 Hb_007676_100 Hb_004659_080--Hb_007676_100 Hb_157966_010 Hb_157966_010 Hb_004659_080--Hb_157966_010 Hb_000622_250 Hb_000622_250 Hb_004659_080--Hb_000622_250 Hb_001221_160 Hb_001221_160 Hb_004659_080--Hb_001221_160 Hb_002392_030 Hb_002392_030 Hb_004659_080--Hb_002392_030 Hb_000813_100 Hb_000813_100 Hb_000594_020--Hb_000813_100 Hb_000594_020--Hb_002659_060 Hb_000594_020--Hb_004899_070 Hb_002411_120 Hb_002411_120 Hb_000594_020--Hb_002411_120 Hb_000594_020--Hb_004970_160 Hb_001493_040 Hb_001493_040 Hb_001417_050--Hb_001493_040 Hb_000160_290 Hb_000160_290 Hb_001417_050--Hb_000160_290 Hb_010315_090 Hb_010315_090 Hb_001417_050--Hb_010315_090 Hb_002422_050 Hb_002422_050 Hb_001417_050--Hb_002422_050 Hb_001417_050--Hb_006252_020 Hb_000796_190 Hb_000796_190 Hb_001417_050--Hb_000796_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.2769 46.8633 19.6289 23.7599 75.9438 66.1185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.0211 16.7874 18.949 44.3298 19.1403

CAGE analysis