Hb_002392_030

Information

Type -
Description -
Location Contig2392: 26485-30796
Sequence    

Annotation

kegg
ID tcc:TCM_007489
description WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
nr
ID XP_007042972.1
description WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
swissprot
ID O22212
description U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1
trembl
ID A0A061E961
description WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related OS=Theobroma cacao GN=TCM_007489 PE=4 SV=1
Gene Ontology
ID GO:0019013
description u4 u6 small nuclear ribonucleoprotein prp4-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25085: 26523-30906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002392_030 0.0 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
2 Hb_133047_010 0.0570924629 - - xanthine dehydrogenase, putative [Ricinus communis]
3 Hb_002066_080 0.0590975483 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
4 Hb_004629_010 0.0679880996 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
5 Hb_148909_030 0.0697223407 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
6 Hb_004659_080 0.0701391656 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
7 Hb_000375_130 0.0711699677 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
8 Hb_015099_010 0.0712355256 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
9 Hb_032920_130 0.073127941 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
10 Hb_001178_150 0.0761074327 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
11 Hb_004884_010 0.0783313788 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
12 Hb_008112_030 0.0790861842 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001493_040 0.080364291 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
14 Hb_111985_080 0.0813905067 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
15 Hb_002022_070 0.0814872271 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
16 Hb_003029_130 0.0816373737 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
17 Hb_001473_090 0.081733226 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
18 Hb_000960_050 0.0820797535 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
19 Hb_009112_010 0.0822446361 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
20 Hb_001221_160 0.082538625 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]

Gene co-expression network

sample Hb_002392_030 Hb_002392_030 Hb_133047_010 Hb_133047_010 Hb_002392_030--Hb_133047_010 Hb_002066_080 Hb_002066_080 Hb_002392_030--Hb_002066_080 Hb_004629_010 Hb_004629_010 Hb_002392_030--Hb_004629_010 Hb_148909_030 Hb_148909_030 Hb_002392_030--Hb_148909_030 Hb_004659_080 Hb_004659_080 Hb_002392_030--Hb_004659_080 Hb_000375_130 Hb_000375_130 Hb_002392_030--Hb_000375_130 Hb_111985_080 Hb_111985_080 Hb_133047_010--Hb_111985_080 Hb_004884_010 Hb_004884_010 Hb_133047_010--Hb_004884_010 Hb_034243_020 Hb_034243_020 Hb_133047_010--Hb_034243_020 Hb_002301_080 Hb_002301_080 Hb_133047_010--Hb_002301_080 Hb_133047_010--Hb_148909_030 Hb_002066_080--Hb_004629_010 Hb_015099_010 Hb_015099_010 Hb_002066_080--Hb_015099_010 Hb_003029_130 Hb_003029_130 Hb_002066_080--Hb_003029_130 Hb_001221_160 Hb_001221_160 Hb_002066_080--Hb_001221_160 Hb_002066_080--Hb_133047_010 Hb_009112_010 Hb_009112_010 Hb_004629_010--Hb_009112_010 Hb_006787_060 Hb_006787_060 Hb_004629_010--Hb_006787_060 Hb_000120_660 Hb_000120_660 Hb_004629_010--Hb_000120_660 Hb_005104_010 Hb_005104_010 Hb_004629_010--Hb_005104_010 Hb_003929_140 Hb_003929_140 Hb_004629_010--Hb_003929_140 Hb_005488_150 Hb_005488_150 Hb_148909_030--Hb_005488_150 Hb_116929_010 Hb_116929_010 Hb_148909_030--Hb_116929_010 Hb_148909_030--Hb_111985_080 Hb_000010_360 Hb_000010_360 Hb_148909_030--Hb_000010_360 Hb_006252_020 Hb_006252_020 Hb_004659_080--Hb_006252_020 Hb_007676_100 Hb_007676_100 Hb_004659_080--Hb_007676_100 Hb_157966_010 Hb_157966_010 Hb_004659_080--Hb_157966_010 Hb_000622_250 Hb_000622_250 Hb_004659_080--Hb_000622_250 Hb_004659_080--Hb_001221_160 Hb_000375_130--Hb_015099_010 Hb_000088_130 Hb_000088_130 Hb_000375_130--Hb_000088_130 Hb_000375_130--Hb_133047_010 Hb_000375_130--Hb_009112_010 Hb_174821_010 Hb_174821_010 Hb_000375_130--Hb_174821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2269 35.2309 19.9484 15.0841 41.8359 44.091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.88559 8.95768 16.2861 20.9131 18.6106

CAGE analysis