Hb_000622_250

Information

Type -
Description -
Location Contig622: 208869-213489
Sequence    

Annotation

kegg
ID rcu:RCOM_1617290
description atpob1, putative
nr
ID XP_002511951.1
description atpob1, putative [Ricinus communis]
swissprot
ID Q9FPW6
description BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana GN=POB1 PE=2 SV=2
trembl
ID B9RE12
description Atpob1, putative OS=Ricinus communis GN=RCOM_1617290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51580: 208943-213314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_250 0.0 - - atpob1, putative [Ricinus communis]
2 Hb_157966_010 0.0567716892 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
3 Hb_004659_080 0.0645830863 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
4 Hb_000236_220 0.0750499316 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
5 Hb_005260_010 0.0768920947 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
6 Hb_000627_180 0.0776542754 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006252_020 0.0801433821 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
8 Hb_007676_100 0.0804787413 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
9 Hb_005143_030 0.0822901951 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
10 Hb_007426_130 0.0838753031 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
11 Hb_156850_070 0.0843479679 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008143_070 0.0856893097 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
13 Hb_007635_030 0.0863693112 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
14 Hb_000069_410 0.0872936152 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
15 Hb_001821_090 0.087621136 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
16 Hb_010712_090 0.0884303651 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
17 Hb_000922_370 0.0885946855 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
18 Hb_093084_070 0.0888251293 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
19 Hb_009615_170 0.0889248364 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
20 Hb_001221_160 0.089455216 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]

Gene co-expression network

sample Hb_000622_250 Hb_000622_250 Hb_157966_010 Hb_157966_010 Hb_000622_250--Hb_157966_010 Hb_004659_080 Hb_004659_080 Hb_000622_250--Hb_004659_080 Hb_000236_220 Hb_000236_220 Hb_000622_250--Hb_000236_220 Hb_005260_010 Hb_005260_010 Hb_000622_250--Hb_005260_010 Hb_000627_180 Hb_000627_180 Hb_000622_250--Hb_000627_180 Hb_006252_020 Hb_006252_020 Hb_000622_250--Hb_006252_020 Hb_157966_010--Hb_004659_080 Hb_018133_050 Hb_018133_050 Hb_157966_010--Hb_018133_050 Hb_006663_040 Hb_006663_040 Hb_157966_010--Hb_006663_040 Hb_000120_660 Hb_000120_660 Hb_157966_010--Hb_000120_660 Hb_007676_100 Hb_007676_100 Hb_157966_010--Hb_007676_100 Hb_004659_080--Hb_006252_020 Hb_004659_080--Hb_007676_100 Hb_001221_160 Hb_001221_160 Hb_004659_080--Hb_001221_160 Hb_002392_030 Hb_002392_030 Hb_004659_080--Hb_002392_030 Hb_093084_070 Hb_093084_070 Hb_000236_220--Hb_093084_070 Hb_003373_040 Hb_003373_040 Hb_000236_220--Hb_003373_040 Hb_004480_040 Hb_004480_040 Hb_000236_220--Hb_004480_040 Hb_000236_220--Hb_005260_010 Hb_001141_370 Hb_001141_370 Hb_000236_220--Hb_001141_370 Hb_000441_070 Hb_000441_070 Hb_000236_220--Hb_000441_070 Hb_000594_040 Hb_000594_040 Hb_005260_010--Hb_000594_040 Hb_000768_180 Hb_000768_180 Hb_005260_010--Hb_000768_180 Hb_000640_310 Hb_000640_310 Hb_005260_010--Hb_000640_310 Hb_000191_130 Hb_000191_130 Hb_005260_010--Hb_000191_130 Hb_000418_140 Hb_000418_140 Hb_005260_010--Hb_000418_140 Hb_000236_410 Hb_000236_410 Hb_000627_180--Hb_000236_410 Hb_000069_410 Hb_000069_410 Hb_000627_180--Hb_000069_410 Hb_002636_180 Hb_002636_180 Hb_000627_180--Hb_002636_180 Hb_005214_090 Hb_005214_090 Hb_000627_180--Hb_005214_090 Hb_000925_160 Hb_000925_160 Hb_000627_180--Hb_000925_160 Hb_002174_020 Hb_002174_020 Hb_006252_020--Hb_002174_020 Hb_003044_020 Hb_003044_020 Hb_006252_020--Hb_003044_020 Hb_004128_050 Hb_004128_050 Hb_006252_020--Hb_004128_050 Hb_001454_280 Hb_001454_280 Hb_006252_020--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_006252_020--Hb_008112_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.8672 46.43 11.5872 22.3524 36.2286 33.6791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2343 10.0887 15.6172 26.4137 14.5244

CAGE analysis