Hb_002636_180

Information

Type -
Description -
Location Contig2636: 144663-147936
Sequence    

Annotation

kegg
ID rcu:RCOM_1466660
description inositol or phosphatidylinositol kinase, putative
nr
ID XP_002514582.1
description inositol or phosphatidylinositol kinase, putative [Ricinus communis]
swissprot
ID Q9SI52
description Phosphatidylinositol 4-kinase gamma 7 OS=Arabidopsis thaliana GN=PI4KG7 PE=1 SV=2
trembl
ID B9RLG3
description Inositol or phosphatidylinositol kinase, putative OS=Ricinus communis GN=RCOM_1466660 PE=4 SV=1
Gene Ontology
ID GO:0016301
description phosphatidylinositol 4-kinase gamma 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27539: 144381-147964 , PASA_asmbl_27540: 147217-147350
cDNA
(Sanger)
(ID:Location)		 043_E03.ab1: 144389-144988

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_180 0.0 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
2 Hb_002890_090 0.0658681215 - - Auxin response factor 1 [Glycine soja]
3 Hb_000345_140 0.0781884912 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
4 Hb_000976_210 0.0800005443 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
5 Hb_000330_040 0.0821316102 - - PREDICTED: protein RER1B-like [Jatropha curcas]
6 Hb_001967_030 0.0860924916 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
7 Hb_000820_120 0.086643576 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
8 Hb_002043_140 0.0885536979 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
9 Hb_002188_110 0.0910204235 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_000441_070 0.0918392423 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
11 Hb_004109_030 0.0932743315 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003455_020 0.09380465 - - PREDICTED: transportin-1 [Jatropha curcas]
13 Hb_003082_010 0.0942262957 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
14 Hb_000941_130 0.0946281785 - - gamma-tubulin complex component, putative [Ricinus communis]
15 Hb_000077_070 0.0960758552 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
16 Hb_000627_180 0.0965457283 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000977_120 0.0966821652 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
18 Hb_128743_010 0.0986642163 - - RNA-binding protein, putative [Ricinus communis]
19 Hb_001247_070 0.0995555073 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
20 Hb_007676_100 0.1001435834 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]

Gene co-expression network

sample Hb_002636_180 Hb_002636_180 Hb_002890_090 Hb_002890_090 Hb_002636_180--Hb_002890_090 Hb_000345_140 Hb_000345_140 Hb_002636_180--Hb_000345_140 Hb_000976_210 Hb_000976_210 Hb_002636_180--Hb_000976_210 Hb_000330_040 Hb_000330_040 Hb_002636_180--Hb_000330_040 Hb_001967_030 Hb_001967_030 Hb_002636_180--Hb_001967_030 Hb_000820_120 Hb_000820_120 Hb_002636_180--Hb_000820_120 Hb_003455_020 Hb_003455_020 Hb_002890_090--Hb_003455_020 Hb_000941_130 Hb_000941_130 Hb_002890_090--Hb_000941_130 Hb_002043_140 Hb_002043_140 Hb_002890_090--Hb_002043_140 Hb_004109_030 Hb_004109_030 Hb_002890_090--Hb_004109_030 Hb_002890_090--Hb_000976_210 Hb_003785_040 Hb_003785_040 Hb_000345_140--Hb_003785_040 Hb_000441_070 Hb_000441_070 Hb_000345_140--Hb_000441_070 Hb_000345_140--Hb_002043_140 Hb_128743_010 Hb_128743_010 Hb_000345_140--Hb_128743_010 Hb_006420_040 Hb_006420_040 Hb_000345_140--Hb_006420_040 Hb_000395_130 Hb_000395_130 Hb_000345_140--Hb_000395_130 Hb_000976_210--Hb_002043_140 Hb_003082_010 Hb_003082_010 Hb_000976_210--Hb_003082_010 Hb_002006_040 Hb_002006_040 Hb_000976_210--Hb_002006_040 Hb_002217_170 Hb_002217_170 Hb_000976_210--Hb_002217_170 Hb_000317_370 Hb_000317_370 Hb_000976_210--Hb_000317_370 Hb_001019_180 Hb_001019_180 Hb_000330_040--Hb_001019_180 Hb_073562_010 Hb_073562_010 Hb_000330_040--Hb_073562_010 Hb_000330_040--Hb_000976_210 Hb_008775_040 Hb_008775_040 Hb_000330_040--Hb_008775_040 Hb_000330_040--Hb_000345_140 Hb_000540_060 Hb_000540_060 Hb_001967_030--Hb_000540_060 Hb_014267_010 Hb_014267_010 Hb_001967_030--Hb_014267_010 Hb_000960_100 Hb_000960_100 Hb_001967_030--Hb_000960_100 Hb_000890_050 Hb_000890_050 Hb_001967_030--Hb_000890_050 Hb_183963_030 Hb_183963_030 Hb_001967_030--Hb_183963_030 Hb_000321_150 Hb_000321_150 Hb_001967_030--Hb_000321_150 Hb_000169_130 Hb_000169_130 Hb_000820_120--Hb_000169_130 Hb_000820_120--Hb_000441_070 Hb_102129_070 Hb_102129_070 Hb_000820_120--Hb_102129_070 Hb_000046_010 Hb_000046_010 Hb_000820_120--Hb_000046_010 Hb_000152_340 Hb_000152_340 Hb_000820_120--Hb_000152_340 Hb_000820_120--Hb_000345_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.5928 173.047 41.9945 58.6689 139.419 87.5796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.4255 48.4561 109.014 80.5491 49.7879

CAGE analysis