Hb_001019_180

Information

Type -
Description -
Location Contig1019: 236810-242626
Sequence    

Annotation

kegg
ID mdm:103400534
description uncharacterized LOC103400534
nr
ID XP_012078733.1
description PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID A0A067K803
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13291 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00942: 237185-238207 , PASA_asmbl_00943: 242277-242584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_180 0.0 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
2 Hb_000330_040 0.0717177549 - - PREDICTED: protein RER1B-like [Jatropha curcas]
3 Hb_012799_120 0.0852919886 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
4 Hb_002110_030 0.0887942027 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
5 Hb_002890_090 0.0895604017 - - Auxin response factor 1 [Glycine soja]
6 Hb_023226_080 0.0907594626 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
7 Hb_002006_040 0.096891966 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
8 Hb_003071_020 0.0988998134 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
9 Hb_073562_010 0.0997852969 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
10 Hb_000345_140 0.1016117735 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
11 Hb_002636_180 0.1024646327 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
12 Hb_000976_210 0.1062387816 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
13 Hb_000236_410 0.1073527553 - - Paramyosin, putative [Ricinus communis]
14 Hb_000941_130 0.1084240565 - - gamma-tubulin complex component, putative [Ricinus communis]
15 Hb_178051_070 0.1093657743 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
16 Hb_000094_320 0.1106237783 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
17 Hb_011930_070 0.1107158327 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
18 Hb_004032_040 0.1117742715 - - unknown [Medicago truncatula]
19 Hb_111889_010 0.1122451135 - - PREDICTED: DNA ligase 4 [Jatropha curcas]
20 Hb_000441_070 0.1122790053 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001019_180 Hb_001019_180 Hb_000330_040 Hb_000330_040 Hb_001019_180--Hb_000330_040 Hb_012799_120 Hb_012799_120 Hb_001019_180--Hb_012799_120 Hb_002110_030 Hb_002110_030 Hb_001019_180--Hb_002110_030 Hb_002890_090 Hb_002890_090 Hb_001019_180--Hb_002890_090 Hb_023226_080 Hb_023226_080 Hb_001019_180--Hb_023226_080 Hb_002006_040 Hb_002006_040 Hb_001019_180--Hb_002006_040 Hb_073562_010 Hb_073562_010 Hb_000330_040--Hb_073562_010 Hb_000976_210 Hb_000976_210 Hb_000330_040--Hb_000976_210 Hb_008775_040 Hb_008775_040 Hb_000330_040--Hb_008775_040 Hb_002636_180 Hb_002636_180 Hb_000330_040--Hb_002636_180 Hb_000345_140 Hb_000345_140 Hb_000330_040--Hb_000345_140 Hb_000304_050 Hb_000304_050 Hb_012799_120--Hb_000304_050 Hb_012799_120--Hb_002110_030 Hb_000820_120 Hb_000820_120 Hb_012799_120--Hb_000820_120 Hb_000441_070 Hb_000441_070 Hb_012799_120--Hb_000441_070 Hb_000340_110 Hb_000340_110 Hb_012799_120--Hb_000340_110 Hb_006831_040 Hb_006831_040 Hb_002110_030--Hb_006831_040 Hb_002110_030--Hb_073562_010 Hb_002110_030--Hb_000330_040 Hb_011512_090 Hb_011512_090 Hb_002110_030--Hb_011512_090 Hb_001575_010 Hb_001575_010 Hb_002110_030--Hb_001575_010 Hb_003455_020 Hb_003455_020 Hb_002890_090--Hb_003455_020 Hb_000941_130 Hb_000941_130 Hb_002890_090--Hb_000941_130 Hb_002890_090--Hb_002636_180 Hb_002043_140 Hb_002043_140 Hb_002890_090--Hb_002043_140 Hb_004109_030 Hb_004109_030 Hb_002890_090--Hb_004109_030 Hb_002890_090--Hb_000976_210 Hb_005542_140 Hb_005542_140 Hb_023226_080--Hb_005542_140 Hb_000176_100 Hb_000176_100 Hb_023226_080--Hb_000176_100 Hb_000069_410 Hb_000069_410 Hb_023226_080--Hb_000069_410 Hb_159558_010 Hb_159558_010 Hb_023226_080--Hb_159558_010 Hb_000012_260 Hb_000012_260 Hb_023226_080--Hb_000012_260 Hb_009615_170 Hb_009615_170 Hb_023226_080--Hb_009615_170 Hb_002006_040--Hb_000976_210 Hb_002006_040--Hb_002043_140 Hb_002006_040--Hb_023226_080 Hb_003729_030 Hb_003729_030 Hb_002006_040--Hb_003729_030 Hb_000402_230 Hb_000402_230 Hb_002006_040--Hb_000402_230 Hb_002006_040--Hb_009615_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42548 4.63465 1.17582 1.25599 2.59462 1.99713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01153 1.2888 2.10847 2.7525 0.89225

CAGE analysis