Hb_012799_120

Information

Type -
Description -
Location Contig12799: 63641-71687
Sequence    

Annotation

kegg
ID rcu:RCOM_1496410
description DNA mismatch repair protein MSH3, putative
nr
ID XP_012090271.1
description PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
swissprot
ID O65607
description DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana GN=MSH3 PE=1 SV=2
trembl
ID A0A067JHN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26124 PE=3 SV=1
Gene Ontology
ID GO:0003684
description dna mismatch repair protein msh3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08639: 64381-64507 , PASA_asmbl_08640: 66019-66526 , PASA_asmbl_08641: 67175-68525 , PASA_asmbl_08642: 69534-71222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_120 0.0 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
2 Hb_001019_180 0.0852919886 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
3 Hb_000304_050 0.0951955856 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
4 Hb_002110_030 0.1012777135 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
5 Hb_000820_120 0.1050560452 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
6 Hb_000441_070 0.1056626617 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
7 Hb_000340_110 0.1087709295 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
8 Hb_000832_320 0.1096384259 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
9 Hb_011930_070 0.1102218207 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
10 Hb_000627_180 0.1105387439 - - conserved hypothetical protein [Ricinus communis]
11 Hb_164010_070 0.1126877986 - - Paramyosin, putative [Ricinus communis]
12 Hb_004480_040 0.112959963 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
13 Hb_000932_070 0.1131861862 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
14 Hb_005214_090 0.1135549584 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
15 Hb_000330_040 0.1154795105 - - PREDICTED: protein RER1B-like [Jatropha curcas]
16 Hb_000236_220 0.1170746123 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
17 Hb_002636_180 0.1178213213 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
18 Hb_000390_100 0.1185804704 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
19 Hb_157966_010 0.1196748265 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
20 Hb_000925_160 0.1199430942 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_012799_120 Hb_012799_120 Hb_001019_180 Hb_001019_180 Hb_012799_120--Hb_001019_180 Hb_000304_050 Hb_000304_050 Hb_012799_120--Hb_000304_050 Hb_002110_030 Hb_002110_030 Hb_012799_120--Hb_002110_030 Hb_000820_120 Hb_000820_120 Hb_012799_120--Hb_000820_120 Hb_000441_070 Hb_000441_070 Hb_012799_120--Hb_000441_070 Hb_000340_110 Hb_000340_110 Hb_012799_120--Hb_000340_110 Hb_000330_040 Hb_000330_040 Hb_001019_180--Hb_000330_040 Hb_001019_180--Hb_002110_030 Hb_002890_090 Hb_002890_090 Hb_001019_180--Hb_002890_090 Hb_023226_080 Hb_023226_080 Hb_001019_180--Hb_023226_080 Hb_002006_040 Hb_002006_040 Hb_001019_180--Hb_002006_040 Hb_004480_040 Hb_004480_040 Hb_000304_050--Hb_004480_040 Hb_034243_020 Hb_034243_020 Hb_000304_050--Hb_034243_020 Hb_000264_100 Hb_000264_100 Hb_000304_050--Hb_000264_100 Hb_001247_070 Hb_001247_070 Hb_000304_050--Hb_001247_070 Hb_000032_010 Hb_000032_010 Hb_000304_050--Hb_000032_010 Hb_000169_130 Hb_000169_130 Hb_000304_050--Hb_000169_130 Hb_006831_040 Hb_006831_040 Hb_002110_030--Hb_006831_040 Hb_073562_010 Hb_073562_010 Hb_002110_030--Hb_073562_010 Hb_002110_030--Hb_000330_040 Hb_011512_090 Hb_011512_090 Hb_002110_030--Hb_011512_090 Hb_001575_010 Hb_001575_010 Hb_002110_030--Hb_001575_010 Hb_000820_120--Hb_000169_130 Hb_000820_120--Hb_000441_070 Hb_102129_070 Hb_102129_070 Hb_000820_120--Hb_102129_070 Hb_000046_010 Hb_000046_010 Hb_000820_120--Hb_000046_010 Hb_000152_340 Hb_000152_340 Hb_000820_120--Hb_000152_340 Hb_000345_140 Hb_000345_140 Hb_000820_120--Hb_000345_140 Hb_000441_070--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000441_070--Hb_001718_090 Hb_000322_150 Hb_000322_150 Hb_000441_070--Hb_000322_150 Hb_000441_070--Hb_004480_040 Hb_076693_020 Hb_076693_020 Hb_000441_070--Hb_076693_020 Hb_000441_070--Hb_000169_130 Hb_029223_050 Hb_029223_050 Hb_000340_110--Hb_029223_050 Hb_001141_370 Hb_001141_370 Hb_000340_110--Hb_001141_370 Hb_001511_110 Hb_001511_110 Hb_000340_110--Hb_001511_110 Hb_000544_060 Hb_000544_060 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_144824_010 Hb_144824_010 Hb_000340_110--Hb_144824_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2783 10.9438 2.1371 1.5194 6.49972 5.14299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.07269 2.49136 3.77883 6.64816 1.92171

CAGE analysis