Hb_002890_090

Information

Type -
Description -
Location Contig2890: 111287-138157
Sequence    

Annotation

kegg
ID rcu:RCOM_0496620
description Auxin response factor, putative
nr
ID KHN39693.1
description Auxin response factor 1 [Glycine soja]
swissprot
ID Q8L7G0
description Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2
trembl
ID A0A0B2S4R4
description Auxin response factor OS=Glycine soja GN=glysoja_020771 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30192: 111543-118162 , PASA_asmbl_30194: 126437-136336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_090 0.0 - - Auxin response factor 1 [Glycine soja]
2 Hb_003455_020 0.0513825967 - - PREDICTED: transportin-1 [Jatropha curcas]
3 Hb_000941_130 0.0657640618 - - gamma-tubulin complex component, putative [Ricinus communis]
4 Hb_002636_180 0.0658681215 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
5 Hb_002043_140 0.0700853962 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
6 Hb_004109_030 0.0712533008 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000976_210 0.0730870051 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
8 Hb_003373_040 0.0785554383 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
9 Hb_007676_100 0.0791454432 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
10 Hb_002006_040 0.0792528527 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
11 Hb_002615_090 0.0795689625 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
12 Hb_000878_180 0.0802478864 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
13 Hb_000345_140 0.0804033489 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
14 Hb_003082_010 0.0827247595 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
15 Hb_000330_040 0.0829547755 - - PREDICTED: protein RER1B-like [Jatropha curcas]
16 Hb_000441_070 0.0847482915 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
17 Hb_000070_080 0.0856256904 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
18 Hb_008103_060 0.0856376226 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
19 Hb_009615_170 0.0864960087 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
20 Hb_093084_070 0.0876664462 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]

Gene co-expression network

sample Hb_002890_090 Hb_002890_090 Hb_003455_020 Hb_003455_020 Hb_002890_090--Hb_003455_020 Hb_000941_130 Hb_000941_130 Hb_002890_090--Hb_000941_130 Hb_002636_180 Hb_002636_180 Hb_002890_090--Hb_002636_180 Hb_002043_140 Hb_002043_140 Hb_002890_090--Hb_002043_140 Hb_004109_030 Hb_004109_030 Hb_002890_090--Hb_004109_030 Hb_000976_210 Hb_000976_210 Hb_002890_090--Hb_000976_210 Hb_000878_180 Hb_000878_180 Hb_003455_020--Hb_000878_180 Hb_003467_020 Hb_003467_020 Hb_003455_020--Hb_003467_020 Hb_003455_020--Hb_004109_030 Hb_003640_040 Hb_003640_040 Hb_003455_020--Hb_003640_040 Hb_003082_010 Hb_003082_010 Hb_003455_020--Hb_003082_010 Hb_000941_130--Hb_004109_030 Hb_002111_070 Hb_002111_070 Hb_000941_130--Hb_002111_070 Hb_009615_170 Hb_009615_170 Hb_000941_130--Hb_009615_170 Hb_157966_010 Hb_157966_010 Hb_000941_130--Hb_157966_010 Hb_003729_030 Hb_003729_030 Hb_000941_130--Hb_003729_030 Hb_000345_140 Hb_000345_140 Hb_002636_180--Hb_000345_140 Hb_002636_180--Hb_000976_210 Hb_000330_040 Hb_000330_040 Hb_002636_180--Hb_000330_040 Hb_001967_030 Hb_001967_030 Hb_002636_180--Hb_001967_030 Hb_000820_120 Hb_000820_120 Hb_002636_180--Hb_000820_120 Hb_002043_140--Hb_000976_210 Hb_011491_010 Hb_011491_010 Hb_002043_140--Hb_011491_010 Hb_002006_040 Hb_002006_040 Hb_002043_140--Hb_002006_040 Hb_008103_060 Hb_008103_060 Hb_002043_140--Hb_008103_060 Hb_007163_120 Hb_007163_120 Hb_002043_140--Hb_007163_120 Hb_002043_140--Hb_009615_170 Hb_008511_090 Hb_008511_090 Hb_004109_030--Hb_008511_090 Hb_004109_030--Hb_003082_010 Hb_003373_040 Hb_003373_040 Hb_004109_030--Hb_003373_040 Hb_000070_080 Hb_000070_080 Hb_004109_030--Hb_000070_080 Hb_000976_210--Hb_003082_010 Hb_000976_210--Hb_002006_040 Hb_002217_170 Hb_002217_170 Hb_000976_210--Hb_002217_170 Hb_000317_370 Hb_000317_370 Hb_000976_210--Hb_000317_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7819 28.7256 9.39925 12.3382 21.1739 19.0341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.41936 9.75974 18.0995 14.1561 7.33349

CAGE analysis