Hb_003455_020

Information

Type -
Description -
Location Contig3455: 58062-93104
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14030g
description POPTRDRAFT_804102; hypothetical protein
nr
ID XP_012077722.1
description PREDICTED: transportin-1 [Jatropha curcas]
swissprot
ID Q8H0U4
description Transportin-1 OS=Arabidopsis thaliana GN=TRN1 PE=1 SV=1
trembl
ID A0A067KB00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13079 PE=4 SV=1
Gene Ontology
ID GO:0005622
description transportin 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36077: 75108-78883 , PASA_asmbl_36078: 78939-92786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003455_020 0.0 - - PREDICTED: transportin-1 [Jatropha curcas]
2 Hb_002890_090 0.0513825967 - - Auxin response factor 1 [Glycine soja]
3 Hb_000878_180 0.0812073908 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
4 Hb_003467_020 0.0845498728 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]
5 Hb_004109_030 0.0847248917 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003640_040 0.0855934732 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
7 Hb_003082_010 0.0874434186 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
8 Hb_000976_210 0.0906401014 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
9 Hb_001818_070 0.0912134114 - - carbon catabolite repressor protein, putative [Ricinus communis]
10 Hb_000680_090 0.0916592935 - - Protein SEY1, putative [Ricinus communis]
11 Hb_000941_130 0.0923049234 - - gamma-tubulin complex component, putative [Ricinus communis]
12 Hb_002043_140 0.0927131141 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
13 Hb_002636_180 0.09380465 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
14 Hb_000080_150 0.0953471522 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
15 Hb_000140_230 0.0977761945 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
16 Hb_000070_080 0.09797897 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
17 Hb_000330_040 0.0983735977 - - PREDICTED: protein RER1B-like [Jatropha curcas]
18 Hb_004195_200 0.0988173007 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
19 Hb_002615_090 0.0989514164 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
20 Hb_002111_070 0.099975225 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]

Gene co-expression network

sample Hb_003455_020 Hb_003455_020 Hb_002890_090 Hb_002890_090 Hb_003455_020--Hb_002890_090 Hb_000878_180 Hb_000878_180 Hb_003455_020--Hb_000878_180 Hb_003467_020 Hb_003467_020 Hb_003455_020--Hb_003467_020 Hb_004109_030 Hb_004109_030 Hb_003455_020--Hb_004109_030 Hb_003640_040 Hb_003640_040 Hb_003455_020--Hb_003640_040 Hb_003082_010 Hb_003082_010 Hb_003455_020--Hb_003082_010 Hb_000941_130 Hb_000941_130 Hb_002890_090--Hb_000941_130 Hb_002636_180 Hb_002636_180 Hb_002890_090--Hb_002636_180 Hb_002043_140 Hb_002043_140 Hb_002890_090--Hb_002043_140 Hb_002890_090--Hb_004109_030 Hb_000976_210 Hb_000976_210 Hb_002890_090--Hb_000976_210 Hb_002025_060 Hb_002025_060 Hb_000878_180--Hb_002025_060 Hb_002615_090 Hb_002615_090 Hb_000878_180--Hb_002615_090 Hb_000680_090 Hb_000680_090 Hb_000878_180--Hb_000680_090 Hb_002235_300 Hb_002235_300 Hb_000878_180--Hb_002235_300 Hb_009615_170 Hb_009615_170 Hb_000878_180--Hb_009615_170 Hb_000084_250 Hb_000084_250 Hb_000878_180--Hb_000084_250 Hb_004767_050 Hb_004767_050 Hb_003467_020--Hb_004767_050 Hb_002188_110 Hb_002188_110 Hb_003467_020--Hb_002188_110 Hb_003467_020--Hb_002890_090 Hb_001818_070 Hb_001818_070 Hb_003467_020--Hb_001818_070 Hb_008500_010 Hb_008500_010 Hb_003467_020--Hb_008500_010 Hb_008511_090 Hb_008511_090 Hb_004109_030--Hb_008511_090 Hb_004109_030--Hb_003082_010 Hb_003373_040 Hb_003373_040 Hb_004109_030--Hb_003373_040 Hb_000070_080 Hb_000070_080 Hb_004109_030--Hb_000070_080 Hb_004109_030--Hb_000941_130 Hb_020831_030 Hb_020831_030 Hb_003640_040--Hb_020831_030 Hb_002056_090 Hb_002056_090 Hb_003640_040--Hb_002056_090 Hb_001195_530 Hb_001195_530 Hb_003640_040--Hb_001195_530 Hb_004195_200 Hb_004195_200 Hb_003640_040--Hb_004195_200 Hb_003640_040--Hb_000680_090 Hb_003640_040--Hb_000070_080 Hb_003082_010--Hb_000976_210 Hb_003082_010--Hb_008511_090 Hb_003082_010--Hb_002043_140 Hb_003752_100 Hb_003752_100 Hb_003082_010--Hb_003752_100 Hb_003082_010--Hb_002890_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.754 19.0877 8.45835 9.69774 16.8184 15.7563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.34161 8.14602 18.1514 10.5159 5.42072

CAGE analysis