Hb_004109_030

Information

Type -
Description -
Location Contig4109: 19537-31360
Sequence    

Annotation

kegg
ID rcu:RCOM_0747070
description hypothetical protein
nr
ID XP_002530135.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93XX4
description C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2
trembl
ID B9SVW6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0747070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40605: 19834-31365 , PASA_asmbl_40612: 23743-23975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008511_090 0.0564954549 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
3 Hb_003082_010 0.0652123683 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
4 Hb_003373_040 0.0683996155 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
5 Hb_002890_090 0.0712533008 - - Auxin response factor 1 [Glycine soja]
6 Hb_000070_080 0.0719825793 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
7 Hb_000941_130 0.0727158318 - - gamma-tubulin complex component, putative [Ricinus communis]
8 Hb_000479_220 0.0730475111 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
9 Hb_001864_060 0.0735248125 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
10 Hb_002043_140 0.0789563479 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
11 Hb_003752_100 0.0793620563 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
12 Hb_000334_220 0.0802572852 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
13 Hb_003455_020 0.0847248917 - - PREDICTED: transportin-1 [Jatropha curcas]
14 Hb_000976_210 0.0870749713 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
15 Hb_005541_010 0.0881138994 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
16 Hb_048219_010 0.0898037693 - - coronatine-insensitive 1 [Hevea brasiliensis]
17 Hb_011491_010 0.0901784018 - - Protein YME1, putative [Ricinus communis]
18 Hb_003640_040 0.09108947 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
19 Hb_000977_120 0.092735982 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
20 Hb_002636_180 0.0932743315 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004109_030 Hb_004109_030 Hb_008511_090 Hb_008511_090 Hb_004109_030--Hb_008511_090 Hb_003082_010 Hb_003082_010 Hb_004109_030--Hb_003082_010 Hb_003373_040 Hb_003373_040 Hb_004109_030--Hb_003373_040 Hb_002890_090 Hb_002890_090 Hb_004109_030--Hb_002890_090 Hb_000070_080 Hb_000070_080 Hb_004109_030--Hb_000070_080 Hb_000941_130 Hb_000941_130 Hb_004109_030--Hb_000941_130 Hb_008511_090--Hb_000070_080 Hb_001005_190 Hb_001005_190 Hb_008511_090--Hb_001005_190 Hb_007163_120 Hb_007163_120 Hb_008511_090--Hb_007163_120 Hb_000479_220 Hb_000479_220 Hb_008511_090--Hb_000479_220 Hb_002078_220 Hb_002078_220 Hb_008511_090--Hb_002078_220 Hb_000976_210 Hb_000976_210 Hb_003082_010--Hb_000976_210 Hb_003082_010--Hb_008511_090 Hb_002043_140 Hb_002043_140 Hb_003082_010--Hb_002043_140 Hb_003752_100 Hb_003752_100 Hb_003082_010--Hb_003752_100 Hb_003082_010--Hb_002890_090 Hb_093084_070 Hb_093084_070 Hb_003373_040--Hb_093084_070 Hb_000236_220 Hb_000236_220 Hb_003373_040--Hb_000236_220 Hb_003373_040--Hb_000070_080 Hb_008103_060 Hb_008103_060 Hb_003373_040--Hb_008103_060 Hb_003373_040--Hb_002078_220 Hb_003455_020 Hb_003455_020 Hb_002890_090--Hb_003455_020 Hb_002890_090--Hb_000941_130 Hb_002636_180 Hb_002636_180 Hb_002890_090--Hb_002636_180 Hb_002890_090--Hb_002043_140 Hb_002890_090--Hb_000976_210 Hb_000070_080--Hb_008103_060 Hb_000070_080--Hb_000479_220 Hb_000162_280 Hb_000162_280 Hb_000070_080--Hb_000162_280 Hb_002078_110 Hb_002078_110 Hb_000070_080--Hb_002078_110 Hb_000070_080--Hb_002078_220 Hb_002111_070 Hb_002111_070 Hb_000941_130--Hb_002111_070 Hb_009615_170 Hb_009615_170 Hb_000941_130--Hb_009615_170 Hb_157966_010 Hb_157966_010 Hb_000941_130--Hb_157966_010 Hb_003729_030 Hb_003729_030 Hb_000941_130--Hb_003729_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.9613 91.5099 35.9276 39.8481 50.0983 57.033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.8103 31.0057 59.7939 35.118 20.9829

CAGE analysis