Hb_000941_130

Information

Type -
Description -
Location Contig941: 155417-158808
Sequence    

Annotation

kegg
ID rcu:RCOM_0413820
description gamma-tubulin complex component, putative
nr
ID XP_002532346.1
description gamma-tubulin complex component, putative [Ricinus communis]
swissprot
ID Q9FG37
description Gamma-tubulin complex component 3 OS=Arabidopsis thaliana GN=GCP3 PE=1 SV=1
trembl
ID B9T277
description Gamma-tubulin complex component, putative OS=Ricinus communis GN=RCOM_0413820 PE=4 SV=1
Gene Ontology
ID GO:0000922
description gamma-tubulin complex component 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63175: 158518-159173 , PASA_asmbl_63176: 155491-158768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000941_130 0.0 - - gamma-tubulin complex component, putative [Ricinus communis]
2 Hb_002890_090 0.0657640618 - - Auxin response factor 1 [Glycine soja]
3 Hb_004109_030 0.0727158318 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002111_070 0.0779083416 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
5 Hb_009615_170 0.0788702344 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
6 Hb_157966_010 0.0815710208 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
7 Hb_003729_030 0.0828609263 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
8 Hb_000120_660 0.0844250884 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
9 Hb_000574_100 0.0845678493 - - DEAD-box protein abstrakt [Populus trichocarpa]
10 Hb_003078_020 0.0866738559 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
11 Hb_000094_310 0.0872375417 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
12 Hb_002043_140 0.0886778047 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
13 Hb_003373_040 0.0887227018 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
14 Hb_093084_070 0.0894185483 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
15 Hb_000878_180 0.0910148591 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
16 Hb_000976_210 0.0918326657 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
17 Hb_003455_020 0.0923049234 - - PREDICTED: transportin-1 [Jatropha curcas]
18 Hb_002046_020 0.0930608046 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
19 Hb_000780_170 0.0934495008 - - PREDICTED: OBERON-like protein [Jatropha curcas]
20 Hb_000327_280 0.0938768222 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000941_130 Hb_000941_130 Hb_002890_090 Hb_002890_090 Hb_000941_130--Hb_002890_090 Hb_004109_030 Hb_004109_030 Hb_000941_130--Hb_004109_030 Hb_002111_070 Hb_002111_070 Hb_000941_130--Hb_002111_070 Hb_009615_170 Hb_009615_170 Hb_000941_130--Hb_009615_170 Hb_157966_010 Hb_157966_010 Hb_000941_130--Hb_157966_010 Hb_003729_030 Hb_003729_030 Hb_000941_130--Hb_003729_030 Hb_003455_020 Hb_003455_020 Hb_002890_090--Hb_003455_020 Hb_002636_180 Hb_002636_180 Hb_002890_090--Hb_002636_180 Hb_002043_140 Hb_002043_140 Hb_002890_090--Hb_002043_140 Hb_002890_090--Hb_004109_030 Hb_000976_210 Hb_000976_210 Hb_002890_090--Hb_000976_210 Hb_008511_090 Hb_008511_090 Hb_004109_030--Hb_008511_090 Hb_003082_010 Hb_003082_010 Hb_004109_030--Hb_003082_010 Hb_003373_040 Hb_003373_040 Hb_004109_030--Hb_003373_040 Hb_000070_080 Hb_000070_080 Hb_004109_030--Hb_000070_080 Hb_000703_150 Hb_000703_150 Hb_002111_070--Hb_000703_150 Hb_000080_150 Hb_000080_150 Hb_002111_070--Hb_000080_150 Hb_002111_070--Hb_002043_140 Hb_002111_070--Hb_009615_170 Hb_000890_210 Hb_000890_210 Hb_002111_070--Hb_000890_210 Hb_001821_090 Hb_001821_090 Hb_009615_170--Hb_001821_090 Hb_012395_140 Hb_012395_140 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_159558_010 Hb_159558_010 Hb_009615_170--Hb_159558_010 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230 Hb_000174_060 Hb_000174_060 Hb_009615_170--Hb_000174_060 Hb_004659_080 Hb_004659_080 Hb_157966_010--Hb_004659_080 Hb_000622_250 Hb_000622_250 Hb_157966_010--Hb_000622_250 Hb_018133_050 Hb_018133_050 Hb_157966_010--Hb_018133_050 Hb_006663_040 Hb_006663_040 Hb_157966_010--Hb_006663_040 Hb_000120_660 Hb_000120_660 Hb_157966_010--Hb_000120_660 Hb_007676_100 Hb_007676_100 Hb_157966_010--Hb_007676_100 Hb_000321_150 Hb_000321_150 Hb_003729_030--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_003729_030--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_003729_030--Hb_002253_080 Hb_003729_030--Hb_000120_660 Hb_000260_070 Hb_000260_070 Hb_003729_030--Hb_000260_070 Hb_011242_060 Hb_011242_060 Hb_003729_030--Hb_011242_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8539 33.11 10.7652 15.2871 17.5936 22.1555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7781 6.85387 19.7881 17.5576 8.44031

CAGE analysis