Hb_006663_040

Information

Type -
Description -
Location Contig6663: 55182-66348
Sequence    

Annotation

kegg
ID rcu:RCOM_0205780
description hypothetical protein
nr
ID XP_012076280.1
description PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9M086
description DDB1- and CUL4-associated factor homolog 1 OS=Arabidopsis thaliana GN=DCAF1 PE=1 SV=2
trembl
ID B9SPT7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0205780 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ddb1- and cul4-associated factor homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53258: 55327-64803 , PASA_asmbl_53259: 59065-59525 , PASA_asmbl_53260: 65895-66224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006663_040 0.0 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
2 Hb_052764_060 0.0444042229 - - XPA-binding protein, putative [Ricinus communis]
3 Hb_000832_320 0.0556237266 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
4 Hb_018133_050 0.062385572 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
5 Hb_000189_100 0.0643647225 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
6 Hb_157966_010 0.0684363753 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
7 Hb_000544_060 0.0711874805 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
8 Hb_004480_040 0.0795657573 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
9 Hb_000327_280 0.0802702775 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
10 Hb_000661_200 0.082766989 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
11 Hb_003284_030 0.0835043154 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
12 Hb_000345_150 0.0867912198 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
13 Hb_003994_100 0.0873235437 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
14 Hb_000120_660 0.0890582696 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
15 Hb_005539_090 0.0892041027 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
16 Hb_000574_510 0.0899155966 - - protein kinase, putative [Ricinus communis]
17 Hb_000949_010 0.0904075691 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
18 Hb_000080_170 0.0921309145 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
19 Hb_000321_150 0.0935092779 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
20 Hb_002022_070 0.0944918635 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_006663_040 Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_006663_040--Hb_052764_060 Hb_000832_320 Hb_000832_320 Hb_006663_040--Hb_000832_320 Hb_018133_050 Hb_018133_050 Hb_006663_040--Hb_018133_050 Hb_000189_100 Hb_000189_100 Hb_006663_040--Hb_000189_100 Hb_157966_010 Hb_157966_010 Hb_006663_040--Hb_157966_010 Hb_000544_060 Hb_000544_060 Hb_006663_040--Hb_000544_060 Hb_000661_200 Hb_000661_200 Hb_052764_060--Hb_000661_200 Hb_052764_060--Hb_000544_060 Hb_052764_060--Hb_018133_050 Hb_052764_060--Hb_000832_320 Hb_004480_040 Hb_004480_040 Hb_052764_060--Hb_004480_040 Hb_000832_320--Hb_018133_050 Hb_000832_320--Hb_004480_040 Hb_000832_320--Hb_000544_060 Hb_000959_040 Hb_000959_040 Hb_000832_320--Hb_000959_040 Hb_018133_050--Hb_157966_010 Hb_018133_050--Hb_000959_040 Hb_003284_030 Hb_003284_030 Hb_018133_050--Hb_003284_030 Hb_000327_280 Hb_000327_280 Hb_000189_100--Hb_000327_280 Hb_000189_100--Hb_018133_050 Hb_000189_100--Hb_000832_320 Hb_000189_100--Hb_052764_060 Hb_000061_510 Hb_000061_510 Hb_000189_100--Hb_000061_510 Hb_004659_080 Hb_004659_080 Hb_157966_010--Hb_004659_080 Hb_000622_250 Hb_000622_250 Hb_157966_010--Hb_000622_250 Hb_000120_660 Hb_000120_660 Hb_157966_010--Hb_000120_660 Hb_007676_100 Hb_007676_100 Hb_157966_010--Hb_007676_100 Hb_001141_370 Hb_001141_370 Hb_000544_060--Hb_001141_370 Hb_000544_060--Hb_000661_200 Hb_001902_060 Hb_001902_060 Hb_000544_060--Hb_001902_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.828 36.9543 8.93326 7.74689 21.6251 18.662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.69582 4.86996 12.6223 14.7246 13.1281

CAGE analysis