Hb_157966_010

Information

Type -
Description -
Location Contig157966: 1246-12491
Sequence    

Annotation

kegg
ID rcu:RCOM_0555330
description hypothetical protein
nr
ID KDP28106.1
description hypothetical protein JCGZ_13877 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13877 PE=4 SV=1
Gene Ontology
ID GO:0008270
description cw-type zinc isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13854: 3937-4932 , PASA_asmbl_13855: 5204-12354 , PASA_asmbl_13856: 5204-6627 , PASA_asmbl_13857: 9919-10536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_157966_010 0.0 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
2 Hb_004659_080 0.0555082198 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
3 Hb_000622_250 0.0567716892 - - atpob1, putative [Ricinus communis]
4 Hb_018133_050 0.0605562143 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
5 Hb_006663_040 0.0684363753 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
6 Hb_000120_660 0.0704181666 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
7 Hb_007676_100 0.0727951862 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
8 Hb_000236_220 0.0734067798 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
9 Hb_000960_100 0.0740603684 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
10 Hb_007426_130 0.0756452613 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
11 Hb_052764_060 0.0762544837 - - XPA-binding protein, putative [Ricinus communis]
12 Hb_005104_010 0.0764007485 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
13 Hb_004480_040 0.0766064013 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
14 Hb_003284_030 0.0767109371 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
15 Hb_004884_150 0.0771204743 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
16 Hb_002615_090 0.0771471813 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
17 Hb_009615_170 0.0771689802 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
18 Hb_000544_060 0.077253229 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
19 Hb_006252_020 0.0777740717 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
20 Hb_001821_090 0.0781950135 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]

Gene co-expression network

sample Hb_157966_010 Hb_157966_010 Hb_004659_080 Hb_004659_080 Hb_157966_010--Hb_004659_080 Hb_000622_250 Hb_000622_250 Hb_157966_010--Hb_000622_250 Hb_018133_050 Hb_018133_050 Hb_157966_010--Hb_018133_050 Hb_006663_040 Hb_006663_040 Hb_157966_010--Hb_006663_040 Hb_000120_660 Hb_000120_660 Hb_157966_010--Hb_000120_660 Hb_007676_100 Hb_007676_100 Hb_157966_010--Hb_007676_100 Hb_006252_020 Hb_006252_020 Hb_004659_080--Hb_006252_020 Hb_004659_080--Hb_007676_100 Hb_004659_080--Hb_000622_250 Hb_001221_160 Hb_001221_160 Hb_004659_080--Hb_001221_160 Hb_002392_030 Hb_002392_030 Hb_004659_080--Hb_002392_030 Hb_000236_220 Hb_000236_220 Hb_000622_250--Hb_000236_220 Hb_005260_010 Hb_005260_010 Hb_000622_250--Hb_005260_010 Hb_000627_180 Hb_000627_180 Hb_000622_250--Hb_000627_180 Hb_000622_250--Hb_006252_020 Hb_000832_320 Hb_000832_320 Hb_018133_050--Hb_000832_320 Hb_018133_050--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_018133_050--Hb_052764_060 Hb_000959_040 Hb_000959_040 Hb_018133_050--Hb_000959_040 Hb_003284_030 Hb_003284_030 Hb_018133_050--Hb_003284_030 Hb_006663_040--Hb_052764_060 Hb_006663_040--Hb_000832_320 Hb_000189_100 Hb_000189_100 Hb_006663_040--Hb_000189_100 Hb_000544_060 Hb_000544_060 Hb_006663_040--Hb_000544_060 Hb_003729_030 Hb_003729_030 Hb_000120_660--Hb_003729_030 Hb_004629_010 Hb_004629_010 Hb_000120_660--Hb_004629_010 Hb_005104_010 Hb_005104_010 Hb_000120_660--Hb_005104_010 Hb_000780_170 Hb_000780_170 Hb_000120_660--Hb_000780_170 Hb_008253_030 Hb_008253_030 Hb_000120_660--Hb_008253_030 Hb_007676_100--Hb_000959_040 Hb_007676_100--Hb_006252_020 Hb_000331_330 Hb_000331_330 Hb_007676_100--Hb_000331_330 Hb_002188_110 Hb_002188_110 Hb_007676_100--Hb_002188_110 Hb_004128_050 Hb_004128_050 Hb_007676_100--Hb_004128_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1214 18.6807 5.46578 6.55158 12.7542 13.8773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.21472 3.61085 7.39636 9.73188 6.55378

CAGE analysis