Hb_000331_330

Information

Type -
Description -
Location Contig331: 269114-276924
Sequence    

Annotation

kegg
ID rcu:RCOM_1506930
description bromodomain-containing protein, putative (EC:2.3.1.48)
nr
ID XP_012079886.1
description PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
swissprot
ID Q9FGW9
description Transcription factor GTE10 OS=Arabidopsis thaliana GN=GTE10 PE=1 SV=2
trembl
ID A0A067K4A4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11333 PE=4 SV=1
Gene Ontology
ID GO:0005515
description transcription factor gte10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34791: 275433-276838
cDNA
(Sanger)
(ID:Location)		 001_O09.ab1: 275433-276519 , 023_I05.ab1: 275433-276366 , 036_H18.ab1: 275433-276520

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_330 0.0 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
2 Hb_007676_100 0.0609547277 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
3 Hb_001243_060 0.0671802676 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
4 Hb_000116_060 0.076540019 - - plant ubiquilin, putative [Ricinus communis]
5 Hb_004128_050 0.0812195749 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
6 Hb_005489_080 0.0850083875 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002615_090 0.0851168039 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
8 Hb_008112_030 0.0853528015 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000732_120 0.0854393648 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
10 Hb_001377_070 0.087924018 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001054_030 0.0886786083 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
12 Hb_003858_090 0.0908015543 - - Filamin-A-interacting protein, putative [Ricinus communis]
13 Hb_006882_020 0.0916300131 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004659_080 0.093016732 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
15 Hb_183963_030 0.0934429856 - - DNA binding protein, putative [Ricinus communis]
16 Hb_006252_020 0.0939646237 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
17 Hb_000768_070 0.0943522737 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
18 Hb_001221_160 0.0949007668 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
19 Hb_001141_370 0.0949387482 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
20 Hb_001902_060 0.0952877868 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_330 Hb_000331_330 Hb_007676_100 Hb_007676_100 Hb_000331_330--Hb_007676_100 Hb_001243_060 Hb_001243_060 Hb_000331_330--Hb_001243_060 Hb_000116_060 Hb_000116_060 Hb_000331_330--Hb_000116_060 Hb_004128_050 Hb_004128_050 Hb_000331_330--Hb_004128_050 Hb_005489_080 Hb_005489_080 Hb_000331_330--Hb_005489_080 Hb_002615_090 Hb_002615_090 Hb_000331_330--Hb_002615_090 Hb_004659_080 Hb_004659_080 Hb_007676_100--Hb_004659_080 Hb_000959_040 Hb_000959_040 Hb_007676_100--Hb_000959_040 Hb_006252_020 Hb_006252_020 Hb_007676_100--Hb_006252_020 Hb_002188_110 Hb_002188_110 Hb_007676_100--Hb_002188_110 Hb_007676_100--Hb_004128_050 Hb_001243_060--Hb_000116_060 Hb_009780_100 Hb_009780_100 Hb_001243_060--Hb_009780_100 Hb_000230_430 Hb_000230_430 Hb_001243_060--Hb_000230_430 Hb_003858_090 Hb_003858_090 Hb_001243_060--Hb_003858_090 Hb_001141_370 Hb_001141_370 Hb_001243_060--Hb_001141_370 Hb_003680_230 Hb_003680_230 Hb_000116_060--Hb_003680_230 Hb_000162_280 Hb_000162_280 Hb_000116_060--Hb_000162_280 Hb_001377_070 Hb_001377_070 Hb_000116_060--Hb_001377_070 Hb_009112_010 Hb_009112_010 Hb_000116_060--Hb_009112_010 Hb_003040_020 Hb_003040_020 Hb_000116_060--Hb_003040_020 Hb_004128_050--Hb_006252_020 Hb_003785_040 Hb_003785_040 Hb_004128_050--Hb_003785_040 Hb_002042_140 Hb_002042_140 Hb_004128_050--Hb_002042_140 Hb_004128_050--Hb_005489_080 Hb_000768_070 Hb_000768_070 Hb_004128_050--Hb_000768_070 Hb_000190_120 Hb_000190_120 Hb_004128_050--Hb_000190_120 Hb_031527_020 Hb_031527_020 Hb_005489_080--Hb_031527_020 Hb_000732_120 Hb_000732_120 Hb_005489_080--Hb_000732_120 Hb_005489_080--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_005489_080--Hb_111198_010 Hb_002025_110 Hb_002025_110 Hb_005489_080--Hb_002025_110 Hb_000960_100 Hb_000960_100 Hb_002615_090--Hb_000960_100 Hb_002615_090--Hb_003785_040 Hb_002235_300 Hb_002235_300 Hb_002615_090--Hb_002235_300 Hb_002253_080 Hb_002253_080 Hb_002615_090--Hb_002253_080 Hb_000878_180 Hb_000878_180 Hb_002615_090--Hb_000878_180 Hb_001767_140 Hb_001767_140 Hb_002615_090--Hb_001767_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0612 27.4518 9.97204 12.6828 25.2487 23.7263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.61471 10.3045 10.8056 7.8835 8.99085

CAGE analysis