Hb_002025_110

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig2025: 64512-67493
Sequence    

Annotation

kegg
ID rcu:RCOM_0774970
description brg-1 associated factor, putative
nr
ID XP_012072430.1
description PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q9FMT4
description SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1
trembl
ID A0A067KTG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04861 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20567: 64475-66769 , PASA_asmbl_20568: 62646-66769 , PASA_asmbl_20570: 66870-67344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_110 0.0 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
2 Hb_000261_220 0.062914894 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
3 Hb_005489_080 0.0694333188 - - conserved hypothetical protein [Ricinus communis]
4 Hb_111198_010 0.078185759 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
5 Hb_033095_020 0.0802575851 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000140_080 0.0803917196 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
7 Hb_031527_020 0.0807325843 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
8 Hb_001171_070 0.0821833214 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like isoform X1 [Jatropha curcas]
9 Hb_002351_020 0.0871664683 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
10 Hb_000457_050 0.0891051261 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
11 Hb_000732_120 0.0901566065 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
12 Hb_000181_120 0.09295583 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
13 Hb_000152_340 0.0958473128 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
14 Hb_010738_010 0.0972306247 - - PREDICTED: B2 protein [Jatropha curcas]
15 Hb_003029_030 0.0988707819 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
16 Hb_001083_050 0.0993988261 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
17 Hb_003299_030 0.1005728502 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
18 Hb_000275_170 0.100725764 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
19 Hb_054865_090 0.1011328813 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
20 Hb_000140_330 0.1017339862 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]

Gene co-expression network

sample Hb_002025_110 Hb_002025_110 Hb_000261_220 Hb_000261_220 Hb_002025_110--Hb_000261_220 Hb_005489_080 Hb_005489_080 Hb_002025_110--Hb_005489_080 Hb_111198_010 Hb_111198_010 Hb_002025_110--Hb_111198_010 Hb_033095_020 Hb_033095_020 Hb_002025_110--Hb_033095_020 Hb_000140_080 Hb_000140_080 Hb_002025_110--Hb_000140_080 Hb_031527_020 Hb_031527_020 Hb_002025_110--Hb_031527_020 Hb_001083_050 Hb_001083_050 Hb_000261_220--Hb_001083_050 Hb_000457_050 Hb_000457_050 Hb_000261_220--Hb_000457_050 Hb_000261_220--Hb_005489_080 Hb_000261_220--Hb_031527_020 Hb_000261_220--Hb_000140_080 Hb_005489_080--Hb_031527_020 Hb_000732_120 Hb_000732_120 Hb_005489_080--Hb_000732_120 Hb_004128_050 Hb_004128_050 Hb_005489_080--Hb_004128_050 Hb_003785_040 Hb_003785_040 Hb_005489_080--Hb_003785_040 Hb_005489_080--Hb_111198_010 Hb_111198_010--Hb_031527_020 Hb_032202_110 Hb_032202_110 Hb_111198_010--Hb_032202_110 Hb_003633_070 Hb_003633_070 Hb_111198_010--Hb_003633_070 Hb_002078_110 Hb_002078_110 Hb_111198_010--Hb_002078_110 Hb_010738_010 Hb_010738_010 Hb_111198_010--Hb_010738_010 Hb_033095_020--Hb_000140_080 Hb_000394_190 Hb_000394_190 Hb_033095_020--Hb_000394_190 Hb_001168_040 Hb_001168_040 Hb_033095_020--Hb_001168_040 Hb_008511_030 Hb_008511_030 Hb_033095_020--Hb_008511_030 Hb_012799_110 Hb_012799_110 Hb_033095_020--Hb_012799_110 Hb_000224_060 Hb_000224_060 Hb_000140_080--Hb_000224_060 Hb_011386_040 Hb_011386_040 Hb_000140_080--Hb_011386_040 Hb_000140_080--Hb_031527_020 Hb_000152_340 Hb_000152_340 Hb_000140_080--Hb_000152_340 Hb_031527_020--Hb_003785_040 Hb_003609_030 Hb_003609_030 Hb_031527_020--Hb_003609_030 Hb_031527_020--Hb_000732_120 Hb_000336_250 Hb_000336_250 Hb_031527_020--Hb_000336_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.2493 74.1956 40.3164 19.7547 64.9492 53.5141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.9614 43.0385 27.6488 16.8665 20.3353

CAGE analysis