Hb_001083_050

Information

Type -
Description -
Location Contig1083: 61930-67991
Sequence    

Annotation

kegg
ID rcu:RCOM_0535560
description vacuolar ATP synthase subunit ac39, putative (EC:3.6.3.14)
nr
ID XP_012083020.1
description PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
swissprot
ID Q9LHA4
description V-type proton ATPase subunit d2 OS=Arabidopsis thaliana GN=VHA-d2 PE=2 SV=1
trembl
ID A0A067LAI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09730 PE=4 SV=1
Gene Ontology
ID GO:0033179
description v-type proton atpase subunit d2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02535: 61984-67929
cDNA
(Sanger)
(ID:Location)		 001_P18.ab1: 63679-67929 , 015_L24.ab1: 63669-67929

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001083_050 0.0 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
2 Hb_000261_220 0.0506460438 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
3 Hb_000477_030 0.0790684163 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
4 Hb_009252_100 0.0831051242 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
5 Hb_057878_010 0.0836239574 - - hypothetical protein VITISV_036304 [Vitis vinifera]
6 Hb_005883_010 0.0888448726 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001171_070 0.0891880119 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like isoform X1 [Jatropha curcas]
8 Hb_002686_250 0.0903183845 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
9 Hb_000181_120 0.0906266963 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
10 Hb_031527_020 0.0912730366 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
11 Hb_005505_050 0.0930797365 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]
12 Hb_000457_050 0.0936009461 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
13 Hb_005489_080 0.0944236387 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004635_050 0.0967162866 - - nucleolar phosphoprotein, putative [Ricinus communis]
15 Hb_000656_250 0.0975825985 - - hypothetical protein JCGZ_24680 [Jatropha curcas]
16 Hb_000120_270 0.0977681229 - - PREDICTED: histone deacetylase 8 [Jatropha curcas]
17 Hb_001616_050 0.0979854619 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
18 Hb_014361_150 0.099145254 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
19 Hb_002025_110 0.0993988261 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
20 Hb_001247_130 0.1000141902 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]

Gene co-expression network

sample Hb_001083_050 Hb_001083_050 Hb_000261_220 Hb_000261_220 Hb_001083_050--Hb_000261_220 Hb_000477_030 Hb_000477_030 Hb_001083_050--Hb_000477_030 Hb_009252_100 Hb_009252_100 Hb_001083_050--Hb_009252_100 Hb_057878_010 Hb_057878_010 Hb_001083_050--Hb_057878_010 Hb_005883_010 Hb_005883_010 Hb_001083_050--Hb_005883_010 Hb_001171_070 Hb_001171_070 Hb_001083_050--Hb_001171_070 Hb_002025_110 Hb_002025_110 Hb_000261_220--Hb_002025_110 Hb_000457_050 Hb_000457_050 Hb_000261_220--Hb_000457_050 Hb_005489_080 Hb_005489_080 Hb_000261_220--Hb_005489_080 Hb_031527_020 Hb_031527_020 Hb_000261_220--Hb_031527_020 Hb_000140_080 Hb_000140_080 Hb_000261_220--Hb_000140_080 Hb_005505_050 Hb_005505_050 Hb_000477_030--Hb_005505_050 Hb_106552_050 Hb_106552_050 Hb_000477_030--Hb_106552_050 Hb_002784_050 Hb_002784_050 Hb_000477_030--Hb_002784_050 Hb_001541_260 Hb_001541_260 Hb_000477_030--Hb_001541_260 Hb_000477_030--Hb_009252_100 Hb_001040_040 Hb_001040_040 Hb_009252_100--Hb_001040_040 Hb_009252_100--Hb_106552_050 Hb_002326_020 Hb_002326_020 Hb_009252_100--Hb_002326_020 Hb_001357_380 Hb_001357_380 Hb_009252_100--Hb_001357_380 Hb_002400_470 Hb_002400_470 Hb_057878_010--Hb_002400_470 Hb_002078_020 Hb_002078_020 Hb_057878_010--Hb_002078_020 Hb_011310_210 Hb_011310_210 Hb_057878_010--Hb_011310_210 Hb_000442_150 Hb_000442_150 Hb_057878_010--Hb_000442_150 Hb_000236_380 Hb_000236_380 Hb_057878_010--Hb_000236_380 Hb_002671_140 Hb_002671_140 Hb_057878_010--Hb_002671_140 Hb_007943_120 Hb_007943_120 Hb_005883_010--Hb_007943_120 Hb_005188_060 Hb_005188_060 Hb_005883_010--Hb_005188_060 Hb_000283_130 Hb_000283_130 Hb_005883_010--Hb_000283_130 Hb_010738_010 Hb_010738_010 Hb_005883_010--Hb_010738_010 Hb_000140_330 Hb_000140_330 Hb_005883_010--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005883_010--Hb_007229_040 Hb_001171_070--Hb_000261_220 Hb_001171_070--Hb_002025_110 Hb_006346_040 Hb_006346_040 Hb_001171_070--Hb_006346_040 Hb_001171_070--Hb_000457_050 Hb_001171_070--Hb_005489_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.636 123.205 83.1862 56.0824 130.143 90.8708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.4332 53.6319 82.8365 36.2739 31.0894

CAGE analysis