Hb_000457_050

Information

Type -
Description -
Location Contig457: 90510-100855
Sequence    

Annotation

kegg
ID rcu:RCOM_0530640
description hypothetical protein
nr
ID XP_012071196.1
description PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
swissprot
ID Q9LK22
description Plant UBX domain-containing protein 1 OS=Arabidopsis thaliana GN=PUX1 PE=1 SV=1
trembl
ID A0A067LD79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10182 PE=4 SV=1
Gene Ontology
ID GO:0035265
description tether containing ubx domain for glut4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43453: 90631-100817
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_050 0.0 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
2 Hb_000261_220 0.0661048711 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
3 Hb_008511_030 0.0766060815 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
4 Hb_003299_030 0.080964401 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
5 Hb_000283_130 0.0813974612 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
6 Hb_009771_100 0.0817770613 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
7 Hb_000152_340 0.0869877124 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
8 Hb_002043_090 0.0882303608 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
9 Hb_031711_010 0.0882882612 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
10 Hb_009780_100 0.0885296659 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
11 Hb_003373_040 0.0888279209 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
12 Hb_002025_110 0.0891051261 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
13 Hb_111198_010 0.0898743139 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
14 Hb_031527_020 0.0913811485 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
15 Hb_000140_080 0.0914088939 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
16 Hb_000034_160 0.0914936414 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
17 Hb_002326_020 0.0915297818 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
18 Hb_065525_060 0.0917849894 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001243_060 0.0935105138 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
20 Hb_001083_050 0.0936009461 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]

Gene co-expression network

sample Hb_000457_050 Hb_000457_050 Hb_000261_220 Hb_000261_220 Hb_000457_050--Hb_000261_220 Hb_008511_030 Hb_008511_030 Hb_000457_050--Hb_008511_030 Hb_003299_030 Hb_003299_030 Hb_000457_050--Hb_003299_030 Hb_000283_130 Hb_000283_130 Hb_000457_050--Hb_000283_130 Hb_009771_100 Hb_009771_100 Hb_000457_050--Hb_009771_100 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340 Hb_001083_050 Hb_001083_050 Hb_000261_220--Hb_001083_050 Hb_002025_110 Hb_002025_110 Hb_000261_220--Hb_002025_110 Hb_005489_080 Hb_005489_080 Hb_000261_220--Hb_005489_080 Hb_031527_020 Hb_031527_020 Hb_000261_220--Hb_031527_020 Hb_000140_080 Hb_000140_080 Hb_000261_220--Hb_000140_080 Hb_008511_030--Hb_031527_020 Hb_008511_030--Hb_005489_080 Hb_008511_030--Hb_000140_080 Hb_033095_020 Hb_033095_020 Hb_008511_030--Hb_033095_020 Hb_000959_270 Hb_000959_270 Hb_008511_030--Hb_000959_270 Hb_002043_090 Hb_002043_090 Hb_003299_030--Hb_002043_090 Hb_003299_030--Hb_008511_030 Hb_002272_020 Hb_002272_020 Hb_003299_030--Hb_002272_020 Hb_111198_010 Hb_111198_010 Hb_003299_030--Hb_111198_010 Hb_003086_190 Hb_003086_190 Hb_003299_030--Hb_003086_190 Hb_005883_010 Hb_005883_010 Hb_000283_130--Hb_005883_010 Hb_010738_010 Hb_010738_010 Hb_000283_130--Hb_010738_010 Hb_000406_240 Hb_000406_240 Hb_000283_130--Hb_000406_240 Hb_017075_030 Hb_017075_030 Hb_000283_130--Hb_017075_030 Hb_004635_050 Hb_004635_050 Hb_000283_130--Hb_004635_050 Hb_031711_010 Hb_031711_010 Hb_009771_100--Hb_031711_010 Hb_009780_100 Hb_009780_100 Hb_009771_100--Hb_009780_100 Hb_011909_060 Hb_011909_060 Hb_009771_100--Hb_011909_060 Hb_001141_370 Hb_001141_370 Hb_009771_100--Hb_001141_370 Hb_000061_490 Hb_000061_490 Hb_009771_100--Hb_000061_490 Hb_001902_060 Hb_001902_060 Hb_000152_340--Hb_001902_060 Hb_000953_030 Hb_000953_030 Hb_000152_340--Hb_000953_030 Hb_000152_340--Hb_000140_080 Hb_000032_010 Hb_000032_010 Hb_000152_340--Hb_000032_010 Hb_000116_060 Hb_000116_060 Hb_000152_340--Hb_000116_060 Hb_003858_090 Hb_003858_090 Hb_000152_340--Hb_003858_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.5548 106.35 52.2489 41.6098 78.7699 60.0508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.1688 45.3681 34.5787 26.1885 16.241

CAGE analysis