Hb_002272_020

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig2272: 8016-10206
Sequence    

Annotation

kegg
ID pmum:103344662
description nuclear transcription factor Y subunit C-3
nr
ID XP_012089091.1
description PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
swissprot
ID Q8L4B2
description Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1
trembl
ID A0A067JU66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23368 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit c-9 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23668: 7764-9041 , PASA_asmbl_23669: 8754-10158 , PASA_asmbl_23670: 11043-14582
cDNA
(Sanger)
(ID:Location)		 017_B18.ab1: 8561-9041

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_020 0.0 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
2 Hb_111198_010 0.0764304988 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
3 Hb_000076_160 0.083465443 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
4 Hb_003299_030 0.0835607062 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
5 Hb_002078_220 0.0844273014 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
6 Hb_003117_020 0.0850322863 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
7 Hb_001946_040 0.0864880924 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001751_140 0.0887345506 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
9 Hb_008511_030 0.0888039071 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
10 Hb_000308_030 0.0896290375 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
11 Hb_000679_310 0.0933318003 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
12 Hb_031527_020 0.0934697873 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
13 Hb_011512_080 0.0944646088 - - hypothetical protein JCGZ_06424 [Jatropha curcas]
14 Hb_000886_050 0.095373886 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
15 Hb_006916_040 0.0953995145 - - 60S ribosomal protein L7a, putative [Ricinus communis]
16 Hb_003371_150 0.0960093104 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
17 Hb_004970_090 0.097014531 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
18 Hb_000487_210 0.0970747669 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
19 Hb_000282_030 0.0979941724 - - K(+) efflux antiporter 4 [Glycine soja]
20 Hb_002043_090 0.0985850685 - - hypothetical protein JCGZ_24811 [Jatropha curcas]

Gene co-expression network

sample Hb_002272_020 Hb_002272_020 Hb_111198_010 Hb_111198_010 Hb_002272_020--Hb_111198_010 Hb_000076_160 Hb_000076_160 Hb_002272_020--Hb_000076_160 Hb_003299_030 Hb_003299_030 Hb_002272_020--Hb_003299_030 Hb_002078_220 Hb_002078_220 Hb_002272_020--Hb_002078_220 Hb_003117_020 Hb_003117_020 Hb_002272_020--Hb_003117_020 Hb_001946_040 Hb_001946_040 Hb_002272_020--Hb_001946_040 Hb_031527_020 Hb_031527_020 Hb_111198_010--Hb_031527_020 Hb_032202_110 Hb_032202_110 Hb_111198_010--Hb_032202_110 Hb_003633_070 Hb_003633_070 Hb_111198_010--Hb_003633_070 Hb_002078_110 Hb_002078_110 Hb_111198_010--Hb_002078_110 Hb_005489_080 Hb_005489_080 Hb_111198_010--Hb_005489_080 Hb_010738_010 Hb_010738_010 Hb_111198_010--Hb_010738_010 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_002043_090 Hb_002043_090 Hb_003299_030--Hb_002043_090 Hb_000457_050 Hb_000457_050 Hb_003299_030--Hb_000457_050 Hb_008511_030 Hb_008511_030 Hb_003299_030--Hb_008511_030 Hb_003299_030--Hb_111198_010 Hb_003086_190 Hb_003086_190 Hb_003299_030--Hb_003086_190 Hb_000886_050 Hb_000886_050 Hb_002078_220--Hb_000886_050 Hb_000070_080 Hb_000070_080 Hb_002078_220--Hb_000070_080 Hb_002078_220--Hb_000076_160 Hb_008511_090 Hb_008511_090 Hb_002078_220--Hb_008511_090 Hb_008103_060 Hb_008103_060 Hb_002078_220--Hb_008103_060 Hb_002876_130 Hb_002876_130 Hb_002078_220--Hb_002876_130 Hb_140049_040 Hb_140049_040 Hb_003117_020--Hb_140049_040 Hb_002542_130 Hb_002542_130 Hb_003117_020--Hb_002542_130 Hb_000103_100 Hb_000103_100 Hb_003117_020--Hb_000103_100 Hb_002477_250 Hb_002477_250 Hb_003117_020--Hb_002477_250 Hb_009780_100 Hb_009780_100 Hb_003117_020--Hb_009780_100 Hb_003117_020--Hb_003633_070 Hb_001946_040--Hb_031527_020 Hb_000336_250 Hb_000336_250 Hb_001946_040--Hb_000336_250 Hb_000309_040 Hb_000309_040 Hb_001946_040--Hb_000309_040 Hb_001247_130 Hb_001247_130 Hb_001946_040--Hb_001247_130 Hb_003371_150 Hb_003371_150 Hb_001946_040--Hb_003371_150 Hb_004055_150 Hb_004055_150 Hb_001946_040--Hb_004055_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2822 15.2232 9.68734 7.7102 9.03468 12.2786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.98942 10.9735 4.78123 5.61074 4.44348

CAGE analysis