Hb_000103_100

Information

Type -
Description -
Location Contig103: 80274-82178
Sequence    

Annotation

kegg
ID pxb:103938794
description pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like
nr
ID XP_012069680.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9SJZ3
description Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1
trembl
ID A0A067L6X2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02213 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_100 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
2 Hb_003633_070 0.0689977643 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
3 Hb_008695_110 0.0739493037 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
4 Hb_000796_180 0.0751110933 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
5 Hb_003117_020 0.0755495662 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
6 Hb_010738_010 0.0760654996 - - PREDICTED: B2 protein [Jatropha curcas]
7 Hb_001767_140 0.0775906018 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
8 Hb_111198_010 0.0789409859 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
9 Hb_000230_090 0.0827646981 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
10 Hb_000786_040 0.083111219 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
11 Hb_000679_340 0.0843295525 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
12 Hb_005104_010 0.0851453867 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
13 Hb_000169_130 0.0872305936 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
14 Hb_008253_030 0.0875411214 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
15 Hb_001143_250 0.0877237156 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
16 Hb_000264_030 0.0879598129 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
17 Hb_032202_110 0.0887862017 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_004357_020 0.0891251897 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
19 Hb_001728_050 0.0891346382 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
20 Hb_002235_300 0.0902299663 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_100 Hb_000103_100 Hb_003633_070 Hb_003633_070 Hb_000103_100--Hb_003633_070 Hb_008695_110 Hb_008695_110 Hb_000103_100--Hb_008695_110 Hb_000796_180 Hb_000796_180 Hb_000103_100--Hb_000796_180 Hb_003117_020 Hb_003117_020 Hb_000103_100--Hb_003117_020 Hb_010738_010 Hb_010738_010 Hb_000103_100--Hb_010738_010 Hb_001767_140 Hb_001767_140 Hb_000103_100--Hb_001767_140 Hb_001799_050 Hb_001799_050 Hb_003633_070--Hb_001799_050 Hb_000418_140 Hb_000418_140 Hb_003633_070--Hb_000418_140 Hb_009112_010 Hb_009112_010 Hb_003633_070--Hb_009112_010 Hb_000162_280 Hb_000162_280 Hb_003633_070--Hb_000162_280 Hb_001143_250 Hb_001143_250 Hb_003633_070--Hb_001143_250 Hb_000640_310 Hb_000640_310 Hb_003633_070--Hb_000640_310 Hb_000084_250 Hb_000084_250 Hb_008695_110--Hb_000084_250 Hb_000914_120 Hb_000914_120 Hb_008695_110--Hb_000914_120 Hb_138596_010 Hb_138596_010 Hb_008695_110--Hb_138596_010 Hb_000230_090 Hb_000230_090 Hb_008695_110--Hb_000230_090 Hb_022256_060 Hb_022256_060 Hb_008695_110--Hb_022256_060 Hb_000574_440 Hb_000574_440 Hb_008695_110--Hb_000574_440 Hb_000174_220 Hb_000174_220 Hb_000796_180--Hb_000174_220 Hb_002636_100 Hb_002636_100 Hb_000796_180--Hb_002636_100 Hb_000139_090 Hb_000139_090 Hb_000796_180--Hb_000139_090 Hb_000092_020 Hb_000092_020 Hb_000796_180--Hb_000092_020 Hb_000169_130 Hb_000169_130 Hb_000796_180--Hb_000169_130 Hb_140049_040 Hb_140049_040 Hb_003117_020--Hb_140049_040 Hb_002542_130 Hb_002542_130 Hb_003117_020--Hb_002542_130 Hb_002477_250 Hb_002477_250 Hb_003117_020--Hb_002477_250 Hb_009780_100 Hb_009780_100 Hb_003117_020--Hb_009780_100 Hb_003117_020--Hb_003633_070 Hb_032202_110 Hb_032202_110 Hb_010738_010--Hb_032202_110 Hb_010738_010--Hb_000169_130 Hb_005883_010 Hb_005883_010 Hb_010738_010--Hb_005883_010 Hb_111198_010 Hb_111198_010 Hb_010738_010--Hb_111198_010 Hb_000283_130 Hb_000283_130 Hb_010738_010--Hb_000283_130 Hb_008253_030 Hb_008253_030 Hb_001767_140--Hb_008253_030 Hb_002253_080 Hb_002253_080 Hb_001767_140--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_001767_140--Hb_002267_140 Hb_001767_140--Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_001767_140--Hb_000174_060 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9705 2.66371 1.58195 0.798596 1.54319 2.22128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.833828 1.06845 1.06494 0.925174 1.22624

CAGE analysis