Hb_000283_130

Information

Type -
Description -
Location Contig283: 120967-123218
Sequence    

Annotation

kegg
ID pop:POPTR_0005s05640g
description prenylated rab acceptor family protein
nr
ID XP_011032390.1
description PREDICTED: PRA1 family protein E-like [Populus euphratica]
swissprot
ID Q9C889
description PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1
trembl
ID A5AWF7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021777 PE=4 SV=1
Gene Ontology
ID GO:0005783
description pra1 family protein f3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29605: 120619-123446
cDNA
(Sanger)
(ID:Location)		 036_L19.ab1: 122712-123446 , 037_M11.ab1: 122674-123446 , 045_J12.ab1: 122757-123446 , 050_B08.ab1: 122740-123446

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000283_130 0.0 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
2 Hb_005883_010 0.0651311893 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010738_010 0.0767489115 - - PREDICTED: B2 protein [Jatropha curcas]
4 Hb_000406_240 0.0795433618 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
5 Hb_017075_030 0.0796543408 - - helicase, putative [Ricinus communis]
6 Hb_000457_050 0.0813974612 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
7 Hb_004635_050 0.0839649209 - - nucleolar phosphoprotein, putative [Ricinus communis]
8 Hb_000034_160 0.0856771999 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
9 Hb_005188_060 0.0867537272 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
10 Hb_000140_330 0.0875626218 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
11 Hb_006346_040 0.0923715441 - - hypothetical protein JCGZ_20335 [Jatropha curcas]
12 Hb_007943_120 0.0926061286 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
13 Hb_007403_050 0.0928200488 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
14 Hb_002326_020 0.0941548913 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
15 Hb_000753_100 0.0942484639 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
16 Hb_000953_030 0.0946995372 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
17 Hb_031711_010 0.0970312095 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
18 Hb_000152_340 0.0984486452 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
19 Hb_000261_220 0.1013550136 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
20 Hb_011909_060 0.1027658892 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000283_130 Hb_000283_130 Hb_005883_010 Hb_005883_010 Hb_000283_130--Hb_005883_010 Hb_010738_010 Hb_010738_010 Hb_000283_130--Hb_010738_010 Hb_000406_240 Hb_000406_240 Hb_000283_130--Hb_000406_240 Hb_017075_030 Hb_017075_030 Hb_000283_130--Hb_017075_030 Hb_000457_050 Hb_000457_050 Hb_000283_130--Hb_000457_050 Hb_004635_050 Hb_004635_050 Hb_000283_130--Hb_004635_050 Hb_007943_120 Hb_007943_120 Hb_005883_010--Hb_007943_120 Hb_005188_060 Hb_005188_060 Hb_005883_010--Hb_005188_060 Hb_005883_010--Hb_010738_010 Hb_000140_330 Hb_000140_330 Hb_005883_010--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005883_010--Hb_007229_040 Hb_032202_110 Hb_032202_110 Hb_010738_010--Hb_032202_110 Hb_000169_130 Hb_000169_130 Hb_010738_010--Hb_000169_130 Hb_111198_010 Hb_111198_010 Hb_010738_010--Hb_111198_010 Hb_000103_100 Hb_000103_100 Hb_010738_010--Hb_000103_100 Hb_007982_070 Hb_007982_070 Hb_000406_240--Hb_007982_070 Hb_000406_240--Hb_017075_030 Hb_001486_080 Hb_001486_080 Hb_000406_240--Hb_001486_080 Hb_000406_240--Hb_005883_010 Hb_000406_240--Hb_000140_330 Hb_000406_240--Hb_004635_050 Hb_033883_060 Hb_033883_060 Hb_017075_030--Hb_033883_060 Hb_003106_150 Hb_003106_150 Hb_017075_030--Hb_003106_150 Hb_031042_070 Hb_031042_070 Hb_017075_030--Hb_031042_070 Hb_001946_300 Hb_001946_300 Hb_017075_030--Hb_001946_300 Hb_003878_140 Hb_003878_140 Hb_017075_030--Hb_003878_140 Hb_000261_220 Hb_000261_220 Hb_000457_050--Hb_000261_220 Hb_008511_030 Hb_008511_030 Hb_000457_050--Hb_008511_030 Hb_003299_030 Hb_003299_030 Hb_000457_050--Hb_003299_030 Hb_009771_100 Hb_009771_100 Hb_000457_050--Hb_009771_100 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340 Hb_004635_050--Hb_007943_120 Hb_007558_120 Hb_007558_120 Hb_004635_050--Hb_007558_120 Hb_004635_050--Hb_033883_060 Hb_003777_160 Hb_003777_160 Hb_004635_050--Hb_003777_160 Hb_004635_050--Hb_005883_010 Hb_019153_020 Hb_019153_020 Hb_004635_050--Hb_019153_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.1327 40.8105 20.1197 10.2533 29.3938 24.4275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8766 10.541 10.9309 9.33657 8.05068

CAGE analysis