Hb_000261_220

Information

Type -
Description -
Location Contig261: 164410-170971
Sequence    

Annotation

kegg
ID rcu:RCOM_1018610
description hypothetical protein
nr
ID XP_012071117.1
description PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
swissprot
ID Q9NVG8
description TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3
trembl
ID A0A067KT89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01109 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27264: 164409-170985 , PASA_asmbl_27265: 166399-167741 , PASA_asmbl_27266: 164611-170985
cDNA
(Sanger)
(ID:Location)		 017_J18.ab1: 169994-170985 , 026_F12.ab1: 169024-170931

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_220 0.0 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
2 Hb_001083_050 0.0506460438 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
3 Hb_002025_110 0.062914894 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
4 Hb_000457_050 0.0661048711 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
5 Hb_005489_080 0.0707323556 - - conserved hypothetical protein [Ricinus communis]
6 Hb_031527_020 0.0732056153 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
7 Hb_000140_080 0.0741445917 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
8 Hb_000181_120 0.0753974729 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
9 Hb_111198_010 0.0763721579 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
10 Hb_001171_070 0.0787421999 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like isoform X1 [Jatropha curcas]
11 Hb_008511_030 0.0839816197 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
12 Hb_003029_030 0.0844730173 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
13 Hb_002686_250 0.0857509706 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
14 Hb_009252_100 0.0860359777 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
15 Hb_033095_020 0.0868632663 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000656_250 0.0882530652 - - hypothetical protein JCGZ_24680 [Jatropha curcas]
17 Hb_000116_060 0.0884441143 - - plant ubiquilin, putative [Ricinus communis]
18 Hb_000477_030 0.0899387912 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
19 Hb_002326_020 0.0916716396 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
20 Hb_001247_130 0.0919084024 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]

Gene co-expression network

sample Hb_000261_220 Hb_000261_220 Hb_001083_050 Hb_001083_050 Hb_000261_220--Hb_001083_050 Hb_002025_110 Hb_002025_110 Hb_000261_220--Hb_002025_110 Hb_000457_050 Hb_000457_050 Hb_000261_220--Hb_000457_050 Hb_005489_080 Hb_005489_080 Hb_000261_220--Hb_005489_080 Hb_031527_020 Hb_031527_020 Hb_000261_220--Hb_031527_020 Hb_000140_080 Hb_000140_080 Hb_000261_220--Hb_000140_080 Hb_000477_030 Hb_000477_030 Hb_001083_050--Hb_000477_030 Hb_009252_100 Hb_009252_100 Hb_001083_050--Hb_009252_100 Hb_057878_010 Hb_057878_010 Hb_001083_050--Hb_057878_010 Hb_005883_010 Hb_005883_010 Hb_001083_050--Hb_005883_010 Hb_001171_070 Hb_001171_070 Hb_001083_050--Hb_001171_070 Hb_002025_110--Hb_005489_080 Hb_111198_010 Hb_111198_010 Hb_002025_110--Hb_111198_010 Hb_033095_020 Hb_033095_020 Hb_002025_110--Hb_033095_020 Hb_002025_110--Hb_000140_080 Hb_002025_110--Hb_031527_020 Hb_008511_030 Hb_008511_030 Hb_000457_050--Hb_008511_030 Hb_003299_030 Hb_003299_030 Hb_000457_050--Hb_003299_030 Hb_000283_130 Hb_000283_130 Hb_000457_050--Hb_000283_130 Hb_009771_100 Hb_009771_100 Hb_000457_050--Hb_009771_100 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340 Hb_005489_080--Hb_031527_020 Hb_000732_120 Hb_000732_120 Hb_005489_080--Hb_000732_120 Hb_004128_050 Hb_004128_050 Hb_005489_080--Hb_004128_050 Hb_003785_040 Hb_003785_040 Hb_005489_080--Hb_003785_040 Hb_005489_080--Hb_111198_010 Hb_031527_020--Hb_003785_040 Hb_031527_020--Hb_111198_010 Hb_003609_030 Hb_003609_030 Hb_031527_020--Hb_003609_030 Hb_031527_020--Hb_000732_120 Hb_000336_250 Hb_000336_250 Hb_031527_020--Hb_000336_250 Hb_000224_060 Hb_000224_060 Hb_000140_080--Hb_000224_060 Hb_000140_080--Hb_033095_020 Hb_011386_040 Hb_011386_040 Hb_000140_080--Hb_011386_040 Hb_000140_080--Hb_031527_020 Hb_000140_080--Hb_000152_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.427 27.3434 17.9765 11.3569 28.9369 19.6321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6599 15.2045 13.7501 8.12976 6.31809

CAGE analysis