Hb_000732_120

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig732: 123119-129702
Sequence    

Annotation

kegg
ID rcu:RCOM_1096430
description hypothetical protein
nr
ID XP_012091471.1
description PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
swissprot
ID Q9SSE9
description Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana GN=JMJ25 PE=1 SV=1
trembl
ID A0A067JLI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21341 PE=4 SV=1
Gene Ontology
ID GO:0008270
description lysine-specific demethylase jmj25 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56119: 124251-125816 , PASA_asmbl_56120: 126076-130639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000732_120 0.0 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
2 Hb_005489_080 0.059136436 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000959_270 0.0681608085 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
4 Hb_000832_090 0.0698799808 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
5 Hb_031527_020 0.0699597579 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
6 Hb_111198_010 0.0735903905 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
7 Hb_004970_090 0.0779081335 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
8 Hb_002835_230 0.0815901567 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_008511_030 0.0821065101 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
10 Hb_010222_050 0.0828761607 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
11 Hb_001377_070 0.0837747279 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003785_040 0.0841847432 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
13 Hb_000032_490 0.0850984493 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
14 Hb_000331_330 0.0854393648 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
15 Hb_002078_110 0.0861708878 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
16 Hb_033153_070 0.0869437039 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
17 Hb_000130_240 0.0871696369 - - hypothetical protein RCOM_1520720 [Ricinus communis]
18 Hb_000334_270 0.0882954286 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
19 Hb_001243_060 0.0886513812 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
20 Hb_002351_020 0.0888875665 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000732_120 Hb_000732_120 Hb_005489_080 Hb_005489_080 Hb_000732_120--Hb_005489_080 Hb_000959_270 Hb_000959_270 Hb_000732_120--Hb_000959_270 Hb_000832_090 Hb_000832_090 Hb_000732_120--Hb_000832_090 Hb_031527_020 Hb_031527_020 Hb_000732_120--Hb_031527_020 Hb_111198_010 Hb_111198_010 Hb_000732_120--Hb_111198_010 Hb_004970_090 Hb_004970_090 Hb_000732_120--Hb_004970_090 Hb_005489_080--Hb_031527_020 Hb_004128_050 Hb_004128_050 Hb_005489_080--Hb_004128_050 Hb_003785_040 Hb_003785_040 Hb_005489_080--Hb_003785_040 Hb_005489_080--Hb_111198_010 Hb_002025_110 Hb_002025_110 Hb_005489_080--Hb_002025_110 Hb_033153_070 Hb_033153_070 Hb_000959_270--Hb_033153_070 Hb_006960_050 Hb_006960_050 Hb_000959_270--Hb_006960_050 Hb_000785_030 Hb_000785_030 Hb_000959_270--Hb_000785_030 Hb_008511_030 Hb_008511_030 Hb_000959_270--Hb_008511_030 Hb_004631_180 Hb_004631_180 Hb_000959_270--Hb_004631_180 Hb_000032_490 Hb_000032_490 Hb_000832_090--Hb_000032_490 Hb_002351_020 Hb_002351_020 Hb_000832_090--Hb_002351_020 Hb_001347_040 Hb_001347_040 Hb_000832_090--Hb_001347_040 Hb_001377_070 Hb_001377_070 Hb_000832_090--Hb_001377_070 Hb_000832_090--Hb_000959_270 Hb_031527_020--Hb_003785_040 Hb_031527_020--Hb_111198_010 Hb_003609_030 Hb_003609_030 Hb_031527_020--Hb_003609_030 Hb_000336_250 Hb_000336_250 Hb_031527_020--Hb_000336_250 Hb_032202_110 Hb_032202_110 Hb_111198_010--Hb_032202_110 Hb_003633_070 Hb_003633_070 Hb_111198_010--Hb_003633_070 Hb_002078_110 Hb_002078_110 Hb_111198_010--Hb_002078_110 Hb_010738_010 Hb_010738_010 Hb_111198_010--Hb_010738_010 Hb_017491_030 Hb_017491_030 Hb_004970_090--Hb_017491_030 Hb_112798_020 Hb_112798_020 Hb_004970_090--Hb_112798_020 Hb_004970_090--Hb_005489_080 Hb_011512_080 Hb_011512_080 Hb_004970_090--Hb_011512_080 Hb_001104_160 Hb_001104_160 Hb_004970_090--Hb_001104_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.5325 7.03273 4.19689 3.60678 7.8919 7.17064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91544 5.47388 3.06849 2.85567 2.99801

CAGE analysis