Hb_000832_090

Information

Type transcription factor
Description TF Family: mTERF
Location Contig832: 59623-89773
Sequence    

Annotation

kegg
ID rcu:RCOM_0454380
description hypothetical protein
nr
ID CAN68939.1
description hypothetical protein VITISV_028994 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HZN0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03870 PE=4 SV=1
Gene Ontology
ID GO:0097159
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59831: 90006-90506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_090 0.0 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
2 Hb_000732_120 0.0698799808 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
3 Hb_000032_490 0.0725415778 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
4 Hb_002351_020 0.078326106 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
5 Hb_001347_040 0.0818896888 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
6 Hb_001377_070 0.0846320261 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000959_270 0.0868911705 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
8 Hb_000140_080 0.0886463341 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
9 Hb_025669_020 0.0890191059 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000116_060 0.0905511693 - - plant ubiquilin, putative [Ricinus communis]
11 Hb_003124_220 0.0940785494 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
12 Hb_002499_070 0.0955186027 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
13 Hb_004724_320 0.09588132 - - Vesicle-associated membrane protein, putative [Ricinus communis]
14 Hb_000130_240 0.0972938279 - - hypothetical protein RCOM_1520720 [Ricinus communis]
15 Hb_131646_010 0.0973740479 - - protein arginine n-methyltransferase, putative [Ricinus communis]
16 Hb_005489_080 0.0974637741 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001752_030 0.0978497737 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
18 Hb_111198_010 0.0981568573 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
19 Hb_000787_090 0.1001636999 - - PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]
20 Hb_075481_030 0.1001809843 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000832_090 Hb_000832_090 Hb_000732_120 Hb_000732_120 Hb_000832_090--Hb_000732_120 Hb_000032_490 Hb_000032_490 Hb_000832_090--Hb_000032_490 Hb_002351_020 Hb_002351_020 Hb_000832_090--Hb_002351_020 Hb_001347_040 Hb_001347_040 Hb_000832_090--Hb_001347_040 Hb_001377_070 Hb_001377_070 Hb_000832_090--Hb_001377_070 Hb_000959_270 Hb_000959_270 Hb_000832_090--Hb_000959_270 Hb_005489_080 Hb_005489_080 Hb_000732_120--Hb_005489_080 Hb_000732_120--Hb_000959_270 Hb_031527_020 Hb_031527_020 Hb_000732_120--Hb_031527_020 Hb_111198_010 Hb_111198_010 Hb_000732_120--Hb_111198_010 Hb_004970_090 Hb_004970_090 Hb_000732_120--Hb_004970_090 Hb_000032_490--Hb_002351_020 Hb_021422_010 Hb_021422_010 Hb_000032_490--Hb_021422_010 Hb_000946_120 Hb_000946_120 Hb_000032_490--Hb_000946_120 Hb_001541_260 Hb_001541_260 Hb_000032_490--Hb_001541_260 Hb_000365_140 Hb_000365_140 Hb_000032_490--Hb_000365_140 Hb_003029_030 Hb_003029_030 Hb_002351_020--Hb_003029_030 Hb_002351_020--Hb_005489_080 Hb_002686_250 Hb_002686_250 Hb_002351_020--Hb_002686_250 Hb_001408_100 Hb_001408_100 Hb_002351_020--Hb_001408_100 Hb_131646_010 Hb_131646_010 Hb_001347_040--Hb_131646_010 Hb_143395_010 Hb_143395_010 Hb_001347_040--Hb_143395_010 Hb_001347_040--Hb_001377_070 Hb_003124_220 Hb_003124_220 Hb_001347_040--Hb_003124_220 Hb_000256_190 Hb_000256_190 Hb_001347_040--Hb_000256_190 Hb_002078_110 Hb_002078_110 Hb_001347_040--Hb_002078_110 Hb_000116_060 Hb_000116_060 Hb_001377_070--Hb_000116_060 Hb_008159_020 Hb_008159_020 Hb_001377_070--Hb_008159_020 Hb_001377_070--Hb_111198_010 Hb_001377_070--Hb_000732_120 Hb_008511_030 Hb_008511_030 Hb_001377_070--Hb_008511_030 Hb_033153_070 Hb_033153_070 Hb_000959_270--Hb_033153_070 Hb_006960_050 Hb_006960_050 Hb_000959_270--Hb_006960_050 Hb_000785_030 Hb_000785_030 Hb_000959_270--Hb_000785_030 Hb_000959_270--Hb_008511_030 Hb_004631_180 Hb_004631_180 Hb_000959_270--Hb_004631_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0395899 0.0443592 0.03415 0.0212341 0.0703188 0.053896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0172195 0.0338791 0.0260904 0.0214517 0.0145589

CAGE analysis