Hb_003029_030

Information

Type -
Description -
Location Contig3029: 12054-16071
Sequence    

Annotation

kegg
ID rcu:RCOM_1346940
description protein binding protein, putative
nr
ID XP_012082909.1
description PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14039 PE=4 SV=1
Gene Ontology
ID GO:0031011
description hit zinc -1-like conserved region isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31933: 12016-15792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003029_030 0.0 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
2 Hb_002686_250 0.051793541 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
3 Hb_131646_010 0.0543984234 - - protein arginine n-methyltransferase, putative [Ricinus communis]
4 Hb_033720_010 0.0628579467 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
5 Hb_001408_100 0.0644518446 - - pseudouridylate synthase, putative [Ricinus communis]
6 Hb_002351_020 0.0668034843 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
7 Hb_010068_040 0.0674394957 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
8 Hb_006960_050 0.0680390269 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
9 Hb_004785_100 0.0709897826 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006620_020 0.0715795687 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
11 Hb_000334_270 0.0721781487 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_000174_110 0.0726291496 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
13 Hb_001486_340 0.0729509452 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
14 Hb_001329_130 0.0745433094 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001926_030 0.0751700636 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
16 Hb_004055_150 0.0763006529 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000368_020 0.0771851733 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
18 Hb_003813_040 0.0794643859 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
19 Hb_008406_110 0.0801501371 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
20 Hb_054865_100 0.0802410644 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003029_030 Hb_003029_030 Hb_002686_250 Hb_002686_250 Hb_003029_030--Hb_002686_250 Hb_131646_010 Hb_131646_010 Hb_003029_030--Hb_131646_010 Hb_033720_010 Hb_033720_010 Hb_003029_030--Hb_033720_010 Hb_001408_100 Hb_001408_100 Hb_003029_030--Hb_001408_100 Hb_002351_020 Hb_002351_020 Hb_003029_030--Hb_002351_020 Hb_010068_040 Hb_010068_040 Hb_003029_030--Hb_010068_040 Hb_002686_250--Hb_131646_010 Hb_004055_150 Hb_004055_150 Hb_002686_250--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_002686_250--Hb_004785_100 Hb_001926_030 Hb_001926_030 Hb_002686_250--Hb_001926_030 Hb_002078_110 Hb_002078_110 Hb_002686_250--Hb_002078_110 Hb_131646_010--Hb_004785_100 Hb_002835_230 Hb_002835_230 Hb_131646_010--Hb_002835_230 Hb_131646_010--Hb_002078_110 Hb_001347_040 Hb_001347_040 Hb_131646_010--Hb_001347_040 Hb_023386_020 Hb_023386_020 Hb_033720_010--Hb_023386_020 Hb_000853_230 Hb_000853_230 Hb_033720_010--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_033720_010--Hb_000879_200 Hb_033720_010--Hb_002686_250 Hb_000794_050 Hb_000794_050 Hb_033720_010--Hb_000794_050 Hb_006620_020 Hb_006620_020 Hb_033720_010--Hb_006620_020 Hb_001408_100--Hb_131646_010 Hb_000160_350 Hb_000160_350 Hb_001408_100--Hb_000160_350 Hb_005965_030 Hb_005965_030 Hb_001408_100--Hb_005965_030 Hb_002157_260 Hb_002157_260 Hb_001408_100--Hb_002157_260 Hb_000771_180 Hb_000771_180 Hb_001408_100--Hb_000771_180 Hb_000032_490 Hb_000032_490 Hb_002351_020--Hb_000032_490 Hb_000832_090 Hb_000832_090 Hb_002351_020--Hb_000832_090 Hb_005489_080 Hb_005489_080 Hb_002351_020--Hb_005489_080 Hb_002351_020--Hb_002686_250 Hb_002351_020--Hb_001408_100 Hb_000174_110 Hb_000174_110 Hb_010068_040--Hb_000174_110 Hb_033153_070 Hb_033153_070 Hb_010068_040--Hb_033153_070 Hb_000334_270 Hb_000334_270 Hb_010068_040--Hb_000334_270 Hb_002175_030 Hb_002175_030 Hb_010068_040--Hb_002175_030 Hb_001433_070 Hb_001433_070 Hb_010068_040--Hb_001433_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7377 11.1036 12.1389 6.69704 18.2419 13.957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9722 10.3671 7.60295 6.26305 5.77649

CAGE analysis