Hb_000160_350

Information

Type -
Description -
Location Contig160: 328601-334622
Sequence    

Annotation

kegg
ID vvi:100257098
description double-stranded RNA-binding protein 4
nr
ID XP_002272597.2
description PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
swissprot
ID Q6YW64
description Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1
trembl
ID D7TSR3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1
Gene Ontology
ID GO:0090501
description double-stranded rna-binding protein 4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14346: 328657-334529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_350 0.0 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
2 Hb_005965_030 0.0422792461 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
3 Hb_000640_310 0.060451158 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
4 Hb_001799_050 0.0635226103 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
5 Hb_079526_030 0.0638407579 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
6 Hb_000771_180 0.0649669783 - - polypyrimidine tract binding protein, putative [Ricinus communis]
7 Hb_022256_060 0.0669186448 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
8 Hb_003638_090 0.0712040963 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
9 Hb_000664_070 0.0715672783 - - PREDICTED: protein cereblon [Jatropha curcas]
10 Hb_000679_340 0.0720699751 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
11 Hb_002157_260 0.0733302645 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
12 Hb_004785_100 0.0737656747 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001408_100 0.0756659918 - - pseudouridylate synthase, putative [Ricinus communis]
14 Hb_001821_160 0.076029585 - - serine/arginine rich splicing factor, putative [Ricinus communis]
15 Hb_027760_080 0.0768255591 - - cytochrome P450, putative [Ricinus communis]
16 Hb_003633_070 0.0770497193 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
17 Hb_001089_110 0.0779113372 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000487_420 0.0790494538 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
19 Hb_000236_470 0.0797212789 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
20 Hb_111198_010 0.0798512791 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_350 Hb_000160_350 Hb_005965_030 Hb_005965_030 Hb_000160_350--Hb_005965_030 Hb_000640_310 Hb_000640_310 Hb_000160_350--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_000160_350--Hb_001799_050 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_000771_180 Hb_000771_180 Hb_000160_350--Hb_000771_180 Hb_022256_060 Hb_022256_060 Hb_000160_350--Hb_022256_060 Hb_002157_260 Hb_002157_260 Hb_005965_030--Hb_002157_260 Hb_004785_100 Hb_004785_100 Hb_005965_030--Hb_004785_100 Hb_000679_340 Hb_000679_340 Hb_005965_030--Hb_000679_340 Hb_003638_090 Hb_003638_090 Hb_005965_030--Hb_003638_090 Hb_005965_030--Hb_022256_060 Hb_000640_310--Hb_001799_050 Hb_000556_170 Hb_000556_170 Hb_000640_310--Hb_000556_170 Hb_000236_470 Hb_000236_470 Hb_000640_310--Hb_000236_470 Hb_000191_130 Hb_000191_130 Hb_000640_310--Hb_000191_130 Hb_023344_010 Hb_023344_010 Hb_000640_310--Hb_023344_010 Hb_003633_070 Hb_003633_070 Hb_001799_050--Hb_003633_070 Hb_000264_030 Hb_000264_030 Hb_001799_050--Hb_000264_030 Hb_001799_050--Hb_000556_170 Hb_001143_250 Hb_001143_250 Hb_001799_050--Hb_001143_250 Hb_001089_110 Hb_001089_110 Hb_079526_030--Hb_001089_110 Hb_000331_110 Hb_000331_110 Hb_079526_030--Hb_000331_110 Hb_001433_070 Hb_001433_070 Hb_079526_030--Hb_001433_070 Hb_003878_110 Hb_003878_110 Hb_079526_030--Hb_003878_110 Hb_001821_160 Hb_001821_160 Hb_079526_030--Hb_001821_160 Hb_002783_310 Hb_002783_310 Hb_000771_180--Hb_002783_310 Hb_050847_020 Hb_050847_020 Hb_000771_180--Hb_050847_020 Hb_140049_030 Hb_140049_030 Hb_000771_180--Hb_140049_030 Hb_000334_270 Hb_000334_270 Hb_000771_180--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_000771_180--Hb_000664_070 Hb_008887_020 Hb_008887_020 Hb_022256_060--Hb_008887_020 Hb_022256_060--Hb_000679_340 Hb_008695_110 Hb_008695_110 Hb_022256_060--Hb_008695_110 Hb_000230_090 Hb_000230_090 Hb_022256_060--Hb_000230_090 Hb_022256_060--Hb_001821_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.6447 34.1584 33.9117 13.3405 37.7402 28.4728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3302 21.3258 14.9354 25.8969 16.7333

CAGE analysis